Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00141 ATGCATGGAAAACAGTGGACCCTCTTCATCATATTATTCCTGCTTTTCTCATTCTCTTTAATCGCCTCTGCCCTCAACCATCAAGGCCAAGCTCTCCTATCATGGAAACAATCTCTGAACTTATCGGCCCAAGAGTTGAACAATTGGGATTCAAATGATGAAACTCCTTGTGACTGGTTTGGAATAACCTGCAACTTCAAACGGGAAGTTGTGGAAATGGAATTCAGGTACGTGGAATTGGGGGGTAGAATTCCCACTAATTTTAGCTCATTGTTGACCCTGAACAAGCTCATCTTGGTGGGAACAAACCTCACTGGTTCAATTCCTAAAGAGATTGGCGATCTAAGAGAACTAAATACATTGGACCTGAGTGGCAATGGCTTGACAGGAGAAATCCAAATTGAGATATGTGGTTTGCTCAAGCTCGAAAATGTCGATCTCAGCTCAAATAGACTTGTGGGCTCGATCCCAGCTGAAATTGGGAATCTTACGATCCTTAAAGAGCTTGGTCTTCATGATAATCAACTTAGCGGTCAAATTCCCAGAAGCATAGGTAACTTGAAGCAGCTTAAGGTGATCAGAGCTGGTGGGAACAGAGACATGGAAGGCAATATAGCTCCAGAAATTGGGAACTGTACCAATTTGGTTTATGTAGGCTTTGCAGAAACCAGAATTTCAGGCTCTCTGCCACCCAGTTTAGGCTTGCTCAAGAAGCTCAAAACACTCGCATTGTACACAACCTTTCTCTCTGGCCAAATTCCTCCTGAAATTGGAAACTGCAGTGAGCTCCAACACATGTTCATCTATGAGACATCGCTAGCAGGCTCGATTCCAACCAGTTTCGGGAATCTCCAGAACCTGCAAAATCTGTTTCTATATAGGAACAGATTGACGGGCACGTTGCCAAAGGAGCTTGGAAACTGTCATCAATTATTGAGTATTGACATTTCAATGAATTCTTTGACGGGAAGCATTCCAACCACATTTGGTAACTTGACTTCGCTACAAGAATTGAACTTGGGAATGAACAATATTTCAGGCGAGATCCCAACTGAGATTGAGAATTGGAGGGAACTTACTCACTTGATGCTTGACAACAACCAAATCATGGGTTTGATACCATCAGAACTAGGGAATTTAAAAAATTTGAGAACGTTATTCTTGTGGCATAACAAGCTCGAGGGAAGTATTCCGTCTTCAATTTCTAGCTGCCAGATGCTTGAAGAGATGGATTTATCAGTCAATGGCTTGACGGGTCACATTCCTGGAGAAATTTTCCAACTCAAGAAGCTTAACAGCCTCATGCTCCTCTCCAACAATCTTTCGGGCGTTATACCTCCAGAGATCGGAAATTGTTCATCGCTAAATCGTTTCAGAGTAAACAACAACATGCTTTTCGGCGCTCTCCCACCCCAGATTGGGAATTTGAAGAATCTGAGTTTCTTAGACCTTGGAGAGAACCGGTTCTCTGGAGTTATGCCTGATGAGATTTCTGGGTGCAAGAATCTGACATTCATCGATATACACTCCAATTATATTACTGGAGCTTTACCCTCAGGTCTCAGCCACCTTATTTCCCTTCAAATCATCGACTTCTCGAGTAATTTAATTGAAGGGAATCTAAATCCTGGTCTCGGACTGTTGAGCTCGCTCACAAAACTCATTCTGTACAACAATCGATTTTCCGGCCCAATCCCAAGTGAGCTCGGTTCCTGCTTGAAGTTACAATTATTGGACCTGAGTGTTAATCAACTTTCCGGTAATCTTCCGGGAAAGCTGGGAGAAATTCCGGCGCTGGAGATCGCTCTAAACCTAAGTTGGAACCGACTTGAAGGCGAGATACCGAAGGAGTTCGCTTATTTAGACAGACTCGGAATCTTGGATCTCTCACACAACCACCTCAGCGGCGACCTCCAAATCATCGCCGTAATGCAGAATCTTGTGGTACTCAACATCTCCGATAACAATTTCTCAGGCCGAGTTCCGATGACTTCCTTCTTCCGAAAACTCCCTCCTAGCGTTCTCTCCGGTAATCCAGATCTCTGCTTTGGCAGCCAGTTCACCGACGAAAATGGAGGCAAAAACTCAAGGCGTGAATCAGCGTCTCGCATAGCAGTGGTGGTGCTACTGTGCATAGCTTGGACGCTTCTCATGGTGGCGTTTTACATGAGCTTCGGATCGAAAAAAAGGGCCCAAAGACGCTTCTACGACGAGCACGACGGCGACGGCAACGGCAACGATAGCGACTTGGAGATTGGCAATGAACTCGAATGGGAGATGACGTTCTATCAGAAGCTCGACCTATCAATATCTGACGTCGCAAAGAAACTGACAGCTGGCAACATCCTTGGCCGTGGCCGATCCGGCGTCGTTTACCAGGTCAACATCCAGCCCGGTTTAACAATTGCCGTCAAACGGTTCAAGACATCGGAGAAGTTCGTCGCCGCCGCATTCTCCTCCGAAATCTCAATTCTAGCCAGTATCCGACATAGGAATATCATCCGGTTGCTCGGTTGGGCAGCAAATCGGAAAATGAAATTGCTATTCTACGACTACTGGCCACACGGAAGCCTTGGCGATCTGTTACACGAGCGGTGCTCTAGTGGATATGTAATCAGCTGGAATGCTCGGTTAAAGATCGCCATCGGCGTGGCAGATGGATTGGCTTACTTGCATCACGACTGCGTTCCCGCGATTTCGCATCGTGACGTGAAGGTCCAAAATATACTGTTGAGTGATGAATACGACGCGTGCCTCACAGATTTTGGATTCGCTAGATTCATTGAAGACAATCCGAACAACTCCTCGTCGGCCAATCCACAATTCGTCGGATCTTATGGCTACATTGCACCAGAGTATGGTCGCATGCTAAAAGTAACAGAAAAAAGCGATGTGTATAGCTATGGAATCGTACTTTTAGAGATGATTACCGGAAAAAAGCCTGCCGATCCTTCATTTCCAGAAGGCCAACACATAATCCAATGGGTTCAGCATCATCTATACAGCCAGAAAGATCCAATCGAGCTTCTGGACCCAAAGCTTACGATCCATCTCGACGCGGAAGTTCAAGAAATGTATCAAGTCCTCGAAATCGCTCTTCTGTGCGCCTATCATCGCGCCGATGATCGCCCGACAATGAAGGACGTTGCTGCATTATTGAGAGGAATTCGAACCGATTCAACAATAATGACGATCAAGGGCAACAAACGTAGTAATAGGCTGAAGAGATTCGAAATTCAATCGTATTAG 3249 45.46 MHGKQWTLFIILFLLFSFSLIASALNHQGQALLSWKQSLNLSAQELNNWDSNDETPCDWFGITCNFKREVVEMEFRYVELGGRIPTNFSSLLTLNKLILVGTNLTGSIPKEIGDLRELNTLDLSGNGLTGEIQIEICGLLKLENVDLSSNRLVGSIPAEIGNLTILKELGLHDNQLSGQIPRSIGNLKQLKVIRAGGNRDMEGNIAPEIGNCTNLVYVGFAETRISGSLPPSLGLLKKLKTLALYTTFLSGQIPPEIGNCSELQHMFIYETSLAGSIPTSFGNLQNLQNLFLYRNRLTGTLPKELGNCHQLLSIDISMNSLTGSIPTTFGNLTSLQELNLGMNNISGEIPTEIENWRELTHLMLDNNQIMGLIPSELGNLKNLRTLFLWHNKLEGSIPSSISSCQMLEEMDLSVNGLTGHIPGEIFQLKKLNSLMLLSNNLSGVIPPEIGNCSSLNRFRVNNNMLFGALPPQIGNLKNLSFLDLGENRFSGVMPDEISGCKNLTFIDIHSNYITGALPSGLSHLISLQIIDFSSNLIEGNLNPGLGLLSSLTKLILYNNRFSGPIPSELGSCLKLQLLDLSVNQLSGNLPGKLGEIPALEIALNLSWNRLEGEIPKEFAYLDRLGILDLSHNHLSGDLQIIAVMQNLVVLNISDNNFSGRVPMTSFFRKLPPSVLSGNPDLCFGSQFTDENGGKNSRRESASRIAVVVLLCIAWTLLMVAFYMSFGSKKRAQRRFYDEHDGDGNGNDSDLEIGNELEWEMTFYQKLDLSISDVAKKLTAGNILGRGRSGVVYQVNIQPGLTIAVKRFKTSEKFVAAAFSSEISILASIRHRNIIRLLGWAANRKMKLLFYDYWPHGSLGDLLHERCSSGYVISWNARLKIAIGVADGLAYLHHDCVPAISHRDVKVQNILLSDEYDACLTDFGFARFIEDNPNNSSSANPQFVGSYGYIAPEYGRMLKVTEKSDVYSYGIVLLEMITGKKPADPSFPEGQHIIQWVQHHLYSQKDPIELLDPKLTIHLDAEVQEMYQVLEIALLCAYHRADDRPTMKDVAALLRGIRTDSTIMTIKGNKRSNRLKRFEIQSY 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1006291 1010166 - CmoCh18G001410.1 Cmo18g00141 401914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00141 1082 ProSitePatterns Serine/Threonine protein kinases active-site signature. 899 911 IPR008271 GO:0004672|GO:0006468
Cmo18g00141 1082 SMART LRR_typ_2 380 404 IPR003591 -
Cmo18g00141 1082 SMART LRR_typ_2 548 572 IPR003591 -
Cmo18g00141 1082 SMART LRR_typ_2 163 187 IPR003591 -
Cmo18g00141 1082 SMART LRR_typ_2 284 308 IPR003591 -
Cmo18g00141 1082 SMART LRR_typ_2 476 499 IPR003591 -
Cmo18g00141 1082 SMART LRR_typ_2 644 677 IPR003591 -
Cmo18g00141 1082 SMART LRR_typ_2 115 139 IPR003591 -
Cmo18g00141 1082 SMART LRR_typ_2 332 356 IPR003591 -
Cmo18g00141 1082 SMART LRR_typ_2 428 452 IPR003591 -
Cmo18g00141 1082 SUPERFAMILY RNI-like 325 667 - -
Cmo18g00141 1082 Gene3D Transferase(Phosphotransferase) domain 1 854 1077 - -
Cmo18g00141 1082 PANTHER OS01G0170300 PROTEIN 8 1065 - -
Cmo18g00141 1082 Pfam Protein kinase domain 780 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00141 1082 SUPERFAMILY RNI-like 75 418 - -
Cmo18g00141 1082 ProSitePatterns Protein kinases ATP-binding region signature. 783 805 IPR017441 GO:0005524
Cmo18g00141 1082 SUPERFAMILY Protein kinase-like (PK-like) 762 1053 IPR011009 -
Cmo18g00141 1082 Gene3D Ribonuclease Inhibitor 324 424 IPR032675 -
Cmo18g00141 1082 Gene3D Ribonuclease Inhibitor 24 198 IPR032675 -
Cmo18g00141 1082 Pfam Leucine rich repeat 357 417 IPR001611 GO:0005515
Cmo18g00141 1082 Pfam Leucine rich repeat 286 345 IPR001611 GO:0005515
Cmo18g00141 1082 SMART serkin_6 777 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00141 1082 Gene3D Phosphorylase Kinase; domain 1 754 852 - -
Cmo18g00141 1082 ProSiteProfiles Protein kinase domain profile. 777 1062 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00141 1082 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 1065 - -
Cmo18g00141 1082 Gene3D Ribonuclease Inhibitor 425 697 IPR032675 -
Cmo18g00141 1082 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cmo18g00141 1082 Gene3D Ribonuclease Inhibitor 199 323 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00117 Cmo18g00141 CCT
Cmo11g00084 Cmo18g00141 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00120 Cmo-Chr17:661522 Cmo18g00141 Cmo-Chr18:1006291 0 dispersed
Cmo10g00117 Cmo-Chr10:515742 Cmo18g00141 Cmo-Chr18:1006291 0 wgd
Cmo11g00084 Cmo-Chr11:394869 Cmo18g00141 Cmo-Chr18:1006291 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75036 PF00069 Pkinase 8.60E-41 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00141 - - csv:101205934 1764.97