Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo18g00146 | ATGGGATCATCATCAAGAACAGAAACAAGCCATTACTACAGCCCTTGTGCAGCCTGCAGATTCCTAAGAAGAAAATGCATAGCAGGGTGTGTTTATGCGCCATATTTTCCACCAGAGGACCCTCAAAAATTTGCCAATGTTCATAAGGTTTTTGGAGCAAGCAACGTAGCCAAGCTGCTCAACGAAGTTCTTCCTCATCAAAGACAAGACGCCGTCGTTTCACTTGCCTATGAAGCCGAGGCTAGAATAAAAGATCCTGTTTATGGCTGTGTTGGTGCCATTTCATGCCTCCAAAAACAGGTCCAAAGGCTCCAAAAGGAGCTCGATGCAGCTAAAGCTCGTCTTTGTCTCTTCTCTTTCACTGACTTTTCAGCTCCCTTTTCATCTCAGCCTCAGATCATTAGCCCTCCTATGATTTGGAATAGTAACAATTATGATATCGTTTATGCTAATTCTTCTATGTATTTTAATGGAGGAATTTGA | 483 | 42.44 | MGSSSRTETSHYYSPCAACRFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYEAEARIKDPVYGCVGAISCLQKQVQRLQKELDAAKARLCLFSFTDFSAPFSSQPQIISPPMIWNSNNYDIVYANSSMYFNGGI | 160 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 1025085 | 1025567 | - | CmoCh18G001460.1 | Cmo18g00146 | 401919 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo18g00146 | 160 | Coils | Coil | 94 | 114 | - | - | |
| Cmo18g00146 | 160 | PANTHER | PROTEIN LATERAL ORGAN BOUNDARIES | 9 | 137 | - | - | |
| Cmo18g00146 | 160 | ProSiteProfiles | LOB domain profile. | 14 | 115 | IPR004883 | - | |
| Cmo18g00146 | 160 | Pfam | Lateral organ boundaries (LOB) domain | 15 | 112 | IPR004883 | - | |
| Cmo18g00146 | 160 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 9 | 137 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo11g00077 | Cmo18g00146 | CCT | |
| Cmo10g00109 | Cmo18g00146 | CCT | |
| Cmo11g00077 | Cmo18g00146 | ECH | |
| Cmo10g00109 | Cmo18g00146 | ECH | |
| Cmo13g00898 | Cmo18g00146 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo14g00684 | Cmo-Chr14:3497304 | Cmo18g00146 | Cmo-Chr18:1025085 | 1.09E-60 | dispersed | |
| Cmo18g00146 | Cmo-Chr18:1025085 | Cmo11g02055 | Cmo-Chr11:13918212 | 3.48E-47 | dispersed | |
| Cmo10g00109 | Cmo-Chr10:468151 | Cmo18g00146 | Cmo-Chr18:1025085 | 8.39E-63 | wgd | |
| Cmo11g00077 | Cmo-Chr11:363795 | Cmo18g00146 | Cmo-Chr18:1025085 | 6.35E-59 | wgd | |
| Cmo13g00898 | Cmo-Chr13:8029265 | Cmo18g00146 | Cmo-Chr18:1025085 | 2.57E-96 | wgd | |
| Cmo18g00146 | Cmo-Chr18:1025085 | Cmo04g02817 | Cmo-Chr4:20199087 | 1.21E-56 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 11475 | PF03195 | LOB | 5.90E-41 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo18g00146 | - | - | ahf:112722314 | 199.134 |