Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00146 ATGGGATCATCATCAAGAACAGAAACAAGCCATTACTACAGCCCTTGTGCAGCCTGCAGATTCCTAAGAAGAAAATGCATAGCAGGGTGTGTTTATGCGCCATATTTTCCACCAGAGGACCCTCAAAAATTTGCCAATGTTCATAAGGTTTTTGGAGCAAGCAACGTAGCCAAGCTGCTCAACGAAGTTCTTCCTCATCAAAGACAAGACGCCGTCGTTTCACTTGCCTATGAAGCCGAGGCTAGAATAAAAGATCCTGTTTATGGCTGTGTTGGTGCCATTTCATGCCTCCAAAAACAGGTCCAAAGGCTCCAAAAGGAGCTCGATGCAGCTAAAGCTCGTCTTTGTCTCTTCTCTTTCACTGACTTTTCAGCTCCCTTTTCATCTCAGCCTCAGATCATTAGCCCTCCTATGATTTGGAATAGTAACAATTATGATATCGTTTATGCTAATTCTTCTATGTATTTTAATGGAGGAATTTGA 483 42.44 MGSSSRTETSHYYSPCAACRFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYEAEARIKDPVYGCVGAISCLQKQVQRLQKELDAAKARLCLFSFTDFSAPFSSQPQIISPPMIWNSNNYDIVYANSSMYFNGGI 160
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 1025085 1025567 - CmoCh18G001460.1 Cmo18g00146 401919
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00146 160 Coils Coil 94 114 - -
Cmo18g00146 160 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 9 137 - -
Cmo18g00146 160 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Cmo18g00146 160 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Cmo18g00146 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 137 - -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00684 Cmo-Chr14:3497304 Cmo18g00146 Cmo-Chr18:1025085 1.09E-60 dispersed
Cmo18g00146 Cmo-Chr18:1025085 Cmo11g02055 Cmo-Chr11:13918212 3.48E-47 dispersed
Cmo10g00109 Cmo-Chr10:468151 Cmo18g00146 Cmo-Chr18:1025085 8.39E-63 wgd
Cmo11g00077 Cmo-Chr11:363795 Cmo18g00146 Cmo-Chr18:1025085 6.35E-59 wgd
Cmo13g00898 Cmo-Chr13:8029265 Cmo18g00146 Cmo-Chr18:1025085 2.57E-96 wgd
Cmo18g00146 Cmo-Chr18:1025085 Cmo04g02817 Cmo-Chr4:20199087 1.21E-56 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11475 PF03195 LOB 5.90E-41 No_clan Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00146 - - ahf:112722314 199.134