Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00152 ATGGAGTCTATTCTTGTGATTAAGGTTAAATATGGAGTGATGCTAAGGCGTCTCAGTGTTAGAATCCTCGAAAACAATAAGCTGGATCTTGACATCAATGGATTAAGAGCAAAAGTACTTAGTCTCTTCAATTTCTCCTCTGATACTGATTTTACACTGACTTACATTGATGAAGATGGTGATACAGTGACCTTGTTCAATGATGATGATCTACATGACATGATGAGGCAACAGCTGAGGTTTCTGAGAATTGATGTTCATCCTAACCAATCCCATGATAGATCCGATGGAAGCTCAACCACGCCATTGCGTTCGTTTCAAGATATTTGTACTGATATTTCTGAGGTTGTGAAATCTCTGCCAGAGCCCTTACCGGAGATTTGTTCACAGTTGCTCAACATCGCTTCAAAAGCCTTAGTTACTGGCCCTGCACTTGATGAGCTTGTTCAAACCATTCTTCAGTTGAAAGACGCGCACCTGAACTCAGATTCGCAGCCCTCATACGTTCCCGAGACAGTTGTGGCCACTGAGAGTTCTGATGCTCCTCCTGGTTTAGATGCAACTGCTTCAGTTGATCATAATGCCCTTCCTCGTGATCCTATTTGGAAATCAGATACTACTGCCCATTGCAGGAGCTGTTCCTTTGATGCATTTCATGATCCCCTTCGTAGAATGCGTATGAACGGTCCTACGTCGATGCACAATTACCCATATCATTCACCAGCAGCAGGTTATCTGAATGATAATCTTATGAAGGAGAGGCCTATGAGAGGATTACCCATGGTTTCTGGACCAATTAGCCATAGTGGTTACTTCCAAACTATGGGAAAAGTCTTCCCTGGAGGTCCAATGAATTACAGCAGTGGCAGCAGCATTGAATCAATGGGAAGTATGTTCCATAAAGGTATTATTTGTGATGGCTGTGGAGCTCATCCAATCACCGGTCCACGGTTCAAGTCCCAAGTGAAAGATAATTTTGATCTATGTAGCATCTGCTTTGCTAAAGTGAGCAATGTGGCTGAATACGTTAGGATCGATCGTCCCGTCTCTTGTCAGTATCCAAGAATGAAAGCATTCAATCCTGTTCTTATGCAGCAGCAGCAGCATCCATTTCCTGGCCCCCGAACAATCGATACACTGAAAAGTTCTGGAAAGCAGACCAAATTTTTAGCTGATATGGATGATTCTGTGATCGCCCCATCTACGCTGTTTACCAAGAAATGGCAGTTGCATAACCTCGGGAGTTCGAATTGGCCCCGTGGTACACAGCTAGTGTGGGATGAAGGAGACAAGTTAAGTGATTCAACATCATTTGAGATACAGGTACCTGCTGGTGGACTTCCTCCGGGACATCAAATTGATATTGAAGTTGACTTTACTTCCCCTCCATTATCTGGTCGGTACCTCTCATACTGGAAGGTAGTATCTCCATCTGGCCAGGAATTCGGGTATCGCGTTTGGCTTCTCATACAGGTTGATGCAGCTCTTAAGAGGCCACATTCTGATAATCTCCAAGCTTTGGACTTAAATTTGCCCCCTAAAGTTGTAGACTCAAATGGCCAAGAAGATCTAAACAAGGATTTGGATACTCTACTTTCTGATAAGCTTTTCCCTCCTCGTGATTCCATCCCCATTGCCAAACCAGTAAAACCTTGTCATAATCTGCCTAAAACTGTGATCGAGCAACAACATGATATGATCGACGAGTTGCTAGTTCGCAAGAGTTCTGCTAATGGCCAAGATCTAAACAAGAATTTGGGTACTCTACTTTCTGATAAGTTTTTCCCTCCTCGTGATTCCATCCCCATTGCCAAACCAGTAAAACCCTGTCATAATCTGCCTGAAAATGCAATCGAGCAACAACAGGACGAACAGGAGATCGACAAGTTGCTAGCTAGCAAGATTCCTGCTAATTTGGTCTCTTATCCAACTGTTGATTACCATGGAGTTCGAGCTAGTTCAACAACCAAGGCTCCCTCTGTGTCATACCCTCATATTGATTCTTCTGAACTAATTCCACCTGCTGCAAACCTATCTCCAAGACCATCCCCCATGGCTTCACATTCTCCAGCATTATCTGAAGATATCAGTTTTGATCATCATATCCAAGGACCTCTACTTAAGGCACTCTGTGAAATGGGATTCAAACATATCTATCTGAACAAGGAAGTACTGAAGAGGAATGGGTACAATCTGGAGAAGTCAGTGGATGAACTCTGTGAGATTCCTGAATGGTATCCGATGATTCAGGAGTTGGATAAAATGGGATTCAAGGATAAGGAAATGAACAGAAAACTCCTGATGAAGAACAATGGCAGCTTGAAGCGAGTAGTGATGGAACTTTTGATGAAGAACAATGCTTAG 2364 43.19 MESILVIKVKYGVMLRRLSVRILENNKLDLDINGLRAKVLSLFNFSSDTDFTLTYIDEDGDTVTLFNDDDLHDMMRQQLRFLRIDVHPNQSHDRSDGSSTTPLRSFQDICTDISEVVKSLPEPLPEICSQLLNIASKALVTGPALDELVQTILQLKDAHLNSDSQPSYVPETVVATESSDAPPGLDATASVDHNALPRDPIWKSDTTAHCRSCSFDAFHDPLRRMRMNGPTSMHNYPYHSPAAGYLNDNLMKERPMRGLPMVSGPISHSGYFQTMGKVFPGGPMNYSSGSSIESMGSMFHKGIICDGCGAHPITGPRFKSQVKDNFDLCSICFAKVSNVAEYVRIDRPVSCQYPRMKAFNPVLMQQQQHPFPGPRTIDTLKSSGKQTKFLADMDDSVIAPSTLFTKKWQLHNLGSSNWPRGTQLVWDEGDKLSDSTSFEIQVPAGGLPPGHQIDIEVDFTSPPLSGRYLSYWKVVSPSGQEFGYRVWLLIQVDAALKRPHSDNLQALDLNLPPKVVDSNGQEDLNKDLDTLLSDKLFPPRDSIPIAKPVKPCHNLPKTVIEQQHDMIDELLVRKSSANGQDLNKNLGTLLSDKFFPPRDSIPIAKPVKPCHNLPENAIEQQQDEQEIDKLLASKIPANLVSYPTVDYHGVRASSTTKAPSVSYPHIDSSELIPPAANLSPRPSPMASHSPALSEDISFDHHIQGPLLKALCEMGFKHIYLNKEVLKRNGYNLEKSVDELCEIPEWYPMIQELDKMGFKDKEMNRKLLMKNNGSLKRVVMELLMKNNA 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1062554 1066477 + CmoCh18G001520.1 Cmo18g00152 401925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00152 787 Gene3D - 700 743 - -
Cmo18g00152 787 Gene3D - 1 88 - -
Cmo18g00152 787 SUPERFAMILY RING/U-box 297 349 - -
Cmo18g00152 787 SUPERFAMILY CAD & PB1 domains 2 88 - -
Cmo18g00152 787 Gene3D - 293 356 IPR043145 -
Cmo18g00152 787 CDD UBA_NBR1 744 782 - -
Cmo18g00152 787 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 735 785 IPR015940 -
Cmo18g00152 787 PANTHER PROTEIN JOKA2 649 782 - -
Cmo18g00152 787 PANTHER PROTEIN JOKA2 225 524 - -
Cmo18g00152 787 PANTHER PROTEIN JOKA2 1 173 - -
Cmo18g00152 787 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 173 - -
Cmo18g00152 787 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 649 782 - -
Cmo18g00152 787 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 225 524 - -
Cmo18g00152 787 Gene3D Immunoglobulins 391 496 IPR013783 -
Cmo18g00152 787 SUPERFAMILY UBA-like 745 782 IPR009060 GO:0005515
Cmo18g00152 787 SMART zz_5 299 344 IPR000433 GO:0008270
Cmo18g00152 787 Pfam Ig-like domain from next to BRCA1 gene 394 492 IPR032350 -
Cmo18g00152 787 Gene3D - 744 786 - -
Cmo18g00152 787 CDD NBR1_like 388 493 IPR032350 -
Cmo18g00152 787 Pfam PB1 domain 7 87 IPR000270 GO:0005515
Cmo18g00152 787 ProSiteProfiles Zinc finger ZZ-type profile. 300 350 IPR000433 GO:0008270
Cmo18g00152 787 Pfam Zinc finger, ZZ type 300 338 IPR000433 GO:0008270
Cmo18g00152 787 ProSiteProfiles PB1 domain profile. 4 89 IPR000270 GO:0005515
Cmo18g00152 787 SMART PB1_new 4 89 IPR000270 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00152 K17987 NBR1; next to BRCA1 gene 1 protein - csv:101205935 617.461
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00893 Cmo18g00152 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00893 Cmo-Chr13:8009145 Cmo18g00152 Cmo-Chr18:1062554 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g826 Blo04g00719 . . . . . . . Cmo13g00893 Cmo18g00152 . . . . . Cpe20g00262 . . . . . . . . . . . . . . . . . Cone13ag0168 Cone19ag0165 . Csa01g00883 Chy12g01240 Cme12g01663 . . . Bda14g00797 . Bpe15g00653 Bma03g00769 . Sed01g1623 . . Cma13g00862 Cma18g00191 Car13g00705 Car18g00183 Cpe09g01004 . Bhi08g01660 Tan05g1970 Cmetu12g0808 . . . . Cla03g00287 Cam03g0304 Cec03g0298 Cco03g0313 Clacu03g0305 Cmu03g0915 Cre03g0607 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004955 1 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 0 1 1 0 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00152 Cmo_Chr18 FPKM 11.797195 11.303085 42.645363 40.955479 13.866069 13.32173 13.371825 31.254196 34.074959 31.717529