Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00155 | ATGTCTCAGGATTTGTCTTTGGATCAAGACCCAGATGAATCTGATCCTGAGTTCGTGGAGATTGATCCTACAGGTCGATATGGACGGTATAAGGAAATTTTAGGGAAAGGGGCATTCAAGAAAGTATATCGGGCTTTTGATGAATTGGAAGGAATTGAAGTAGCTTGGAATCAGGTTAAAGTAACAGATCTATTACGGAATTCTGAAGATTTGGAGCGACTTTATTCAGAAGTTCATTTGCTCAAGACATTGAAACACAAGAACATAATCAAATTTTACAATTCATGGGTTGATACGAAGAATGAAAACATTAACTTCATTACTGAGATATTCACTTCAGGGACACTTCGACAATATAGAAAGAAACACAAGCATGTTGATTTGAGAGCACTGAAAAAGTGGTCTAGGCAGATATTAGAGGGCCTTTTGTATCTTCATAGTCATGATCCTCCGGTTATTCATAGAGATTTGAAATGTGACAATATCTTTGTCAATGGCAACCAAGGTGAGGTGAAAATTGGTGACTTAGGACTTGCTGCCATTCTTCAACAAGCTCGTTCGGCTCACAGTGTCATTGGGACGCCAGAGTTTATGGCCCCAGAGTTGTATGAGGAGGAATACAATGAACTTGTGGATATTTATGCTTTTGGGATGTGTTTGCTTGAGCTTGTAACCTTTGAATATCCGTATATTGAATGTGCAAACGCTGCTCAAATCTATAAGAAGGTCACATCAGGGATAAAGCCAGCTTCATTGGCAAAGGTCACCGATGGGGGAGTTAGAGCATTTATAGAAAAATGTATTGCAAATGTCTCTGATCGCTTGCCTGCAAAAGATCTTTTAAGAGATCCATTTCTTCTAGCAGATGAAGAACATGAAAGTATATCACGTCATCTACATCCCAAAATACACCATAAAGAGAAAAGAGAACAAATTGATACTGATACAAGCGTAGATGATACTCCTGCTACTAGCGTAGACTTCAGCATGCATGGTCAAAGAAAAGATGTTAACAAGATATTTCTCAAACTAAGAATTGCAGACTCCATGGGTAATTTTCGCAATATCCATTTCCCATTTGATATTGAAGCCGACACATCAATTTCTGTTGCTAGTGAAATGGTTGAGGAGTTGGATCTTTCAGATCAAGATGTCTCTACGATTTCTGAAATGATCGAATCCGAAATTCGGTCGTATATTCCAGATTGGACATCAGTTGAGTATCCTGTAGATAATGTAGGAGCAGACGTTGTCATTTCTGATAGCTCTCCATCTGATTCAAGAACTGCTGCCTCTCCCTTATCTATAGAATCTGGTAACCTTGCATTAGAGGTCCTGCCTTCAGGTCGCAAGTATTGGTCCGACTCGCCGAAGGGAGTGGGTGGGTGCTCTCCCGTTAAGCCAGGTCCTTCAAACTTGTCTTTTGCCTCAGAACAGAATGTTGAATCCTCTAGTAGCCACATGCATGAGGATAACATAGATCATGCAGCCATAATCATGGGACTAGAAAATGAGCTTTTGTCTGAAGATGCTGCTAATGATGGGCAGGATGAGAGTATATTAACTACAGATATTCATGCTAGCTCTGAGGCACATCCCTCAGATTATGATGAATCAATTGGCATCGAGATAATGACCGAAAAACTCGAAAATTTGTTGACACAGCAAAAAGAAGAATTAGATGAACTGAAAACCAAACAGAAATTAGCCATTTCAGAGCTTCTGGCTGAACTTACACCTGAGACCCATCAGAAAGTTTTGAAGATATGCAAGCTTAAGCATTCTGATATGTAA | 1794 | 39.69 | MSQDLSLDQDPDESDPEFVEIDPTGRYGRYKEILGKGAFKKVYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYIECANAAQIYKKVTSGIKPASLAKVTDGGVRAFIEKCIANVSDRLPAKDLLRDPFLLADEEHESISRHLHPKIHHKEKREQIDTDTSVDDTPATSVDFSMHGQRKDVNKIFLKLRIADSMGNFRNIHFPFDIEADTSISVASEMVEELDLSDQDVSTISEMIESEIRSYIPDWTSVEYPVDNVGADVVISDSSPSDSRTAASPLSIESGNLALEVLPSGRKYWSDSPKGVGGCSPVKPGPSNLSFASEQNVESSSSHMHEDNIDHAAIIMGLENELLSEDAANDGQDESILTTDIHASSEAHPSDYDESIGIEIMTEKLENLLTQQKEELDELKTKQKLAISELLAELTPETHQKVLKICKLKHSDM | 597 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 1078095 | 1082019 | - | CmoCh18G001550.1 | Cmo18g00155 | 401928 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00155 | 597 | Coils | Coil | 542 | 573 | - | - | |
Cmo18g00155 | 597 | Pfam | Protein kinase domain | 31 | 286 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo18g00155 | 597 | ProSiteProfiles | Protein kinase domain profile. | 28 | 286 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo18g00155 | 597 | Gene3D | - | 338 | 413 | - | - | |
Cmo18g00155 | 597 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 342 | 396 | IPR024678 | GO:0004674|GO:0005524 | |
Cmo18g00155 | 597 | PANTHER | SERINE/THREONINE-PROTEIN KINASE-RELATED | 7 | 594 | - | - | |
Cmo18g00155 | 597 | SMART | serkin_6 | 28 | 286 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo18g00155 | 597 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 7 | 594 | - | - | |
Cmo18g00155 | 597 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 152 | 164 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo18g00155 | 597 | Gene3D | Phosphorylase Kinase; domain 1 | 12 | 109 | - | - | |
Cmo18g00155 | 597 | CDD | STKc_WNK | 26 | 286 | - | - | |
Cmo18g00155 | 597 | SUPERFAMILY | Protein kinase-like (PK-like) | 30 | 287 | IPR011009 | - | |
Cmo18g00155 | 597 | Gene3D | Transferase(Phosphotransferase) domain 1 | 111 | 292 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo13g00886 | Cmo18g00155 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo15g01376 | Cmo-Chr15:9374276 | Cmo18g00155 | Cmo-Chr18:1078095 | 1.05E-154 | dispersed | |
Cmo17g00224 | Cmo-Chr17:1320289 | Cmo18g00155 | Cmo-Chr18:1078095 | 7.44E-173 | dispersed | |
Cmo18g00155 | Cmo-Chr18:1078095 | Cmo20g00336 | Cmo-Chr20:1658918 | 1.38E-160 | dispersed | |
Cmo13g00886 | Cmo-Chr13:7991434 | Cmo18g00155 | Cmo-Chr18:1078095 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75037 | PF00069 | Pkinase | 1.40E-49 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00155 | K08867 | - | csv:101206177 | 1018.84 |