Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00155 ATGTCTCAGGATTTGTCTTTGGATCAAGACCCAGATGAATCTGATCCTGAGTTCGTGGAGATTGATCCTACAGGTCGATATGGACGGTATAAGGAAATTTTAGGGAAAGGGGCATTCAAGAAAGTATATCGGGCTTTTGATGAATTGGAAGGAATTGAAGTAGCTTGGAATCAGGTTAAAGTAACAGATCTATTACGGAATTCTGAAGATTTGGAGCGACTTTATTCAGAAGTTCATTTGCTCAAGACATTGAAACACAAGAACATAATCAAATTTTACAATTCATGGGTTGATACGAAGAATGAAAACATTAACTTCATTACTGAGATATTCACTTCAGGGACACTTCGACAATATAGAAAGAAACACAAGCATGTTGATTTGAGAGCACTGAAAAAGTGGTCTAGGCAGATATTAGAGGGCCTTTTGTATCTTCATAGTCATGATCCTCCGGTTATTCATAGAGATTTGAAATGTGACAATATCTTTGTCAATGGCAACCAAGGTGAGGTGAAAATTGGTGACTTAGGACTTGCTGCCATTCTTCAACAAGCTCGTTCGGCTCACAGTGTCATTGGGACGCCAGAGTTTATGGCCCCAGAGTTGTATGAGGAGGAATACAATGAACTTGTGGATATTTATGCTTTTGGGATGTGTTTGCTTGAGCTTGTAACCTTTGAATATCCGTATATTGAATGTGCAAACGCTGCTCAAATCTATAAGAAGGTCACATCAGGGATAAAGCCAGCTTCATTGGCAAAGGTCACCGATGGGGGAGTTAGAGCATTTATAGAAAAATGTATTGCAAATGTCTCTGATCGCTTGCCTGCAAAAGATCTTTTAAGAGATCCATTTCTTCTAGCAGATGAAGAACATGAAAGTATATCACGTCATCTACATCCCAAAATACACCATAAAGAGAAAAGAGAACAAATTGATACTGATACAAGCGTAGATGATACTCCTGCTACTAGCGTAGACTTCAGCATGCATGGTCAAAGAAAAGATGTTAACAAGATATTTCTCAAACTAAGAATTGCAGACTCCATGGGTAATTTTCGCAATATCCATTTCCCATTTGATATTGAAGCCGACACATCAATTTCTGTTGCTAGTGAAATGGTTGAGGAGTTGGATCTTTCAGATCAAGATGTCTCTACGATTTCTGAAATGATCGAATCCGAAATTCGGTCGTATATTCCAGATTGGACATCAGTTGAGTATCCTGTAGATAATGTAGGAGCAGACGTTGTCATTTCTGATAGCTCTCCATCTGATTCAAGAACTGCTGCCTCTCCCTTATCTATAGAATCTGGTAACCTTGCATTAGAGGTCCTGCCTTCAGGTCGCAAGTATTGGTCCGACTCGCCGAAGGGAGTGGGTGGGTGCTCTCCCGTTAAGCCAGGTCCTTCAAACTTGTCTTTTGCCTCAGAACAGAATGTTGAATCCTCTAGTAGCCACATGCATGAGGATAACATAGATCATGCAGCCATAATCATGGGACTAGAAAATGAGCTTTTGTCTGAAGATGCTGCTAATGATGGGCAGGATGAGAGTATATTAACTACAGATATTCATGCTAGCTCTGAGGCACATCCCTCAGATTATGATGAATCAATTGGCATCGAGATAATGACCGAAAAACTCGAAAATTTGTTGACACAGCAAAAAGAAGAATTAGATGAACTGAAAACCAAACAGAAATTAGCCATTTCAGAGCTTCTGGCTGAACTTACACCTGAGACCCATCAGAAAGTTTTGAAGATATGCAAGCTTAAGCATTCTGATATGTAA 1794 39.69 MSQDLSLDQDPDESDPEFVEIDPTGRYGRYKEILGKGAFKKVYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYIECANAAQIYKKVTSGIKPASLAKVTDGGVRAFIEKCIANVSDRLPAKDLLRDPFLLADEEHESISRHLHPKIHHKEKREQIDTDTSVDDTPATSVDFSMHGQRKDVNKIFLKLRIADSMGNFRNIHFPFDIEADTSISVASEMVEELDLSDQDVSTISEMIESEIRSYIPDWTSVEYPVDNVGADVVISDSSPSDSRTAASPLSIESGNLALEVLPSGRKYWSDSPKGVGGCSPVKPGPSNLSFASEQNVESSSSHMHEDNIDHAAIIMGLENELLSEDAANDGQDESILTTDIHASSEAHPSDYDESIGIEIMTEKLENLLTQQKEELDELKTKQKLAISELLAELTPETHQKVLKICKLKHSDM 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1078095 1082019 - CmoCh18G001550.1 Cmo18g00155 401928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00155 597 Coils Coil 542 573 - -
Cmo18g00155 597 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00155 597 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00155 597 Gene3D - 338 413 - -
Cmo18g00155 597 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 342 396 IPR024678 GO:0004674|GO:0005524
Cmo18g00155 597 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 7 594 - -
Cmo18g00155 597 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00155 597 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 594 - -
Cmo18g00155 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Cmo18g00155 597 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Cmo18g00155 597 CDD STKc_WNK 26 286 - -
Cmo18g00155 597 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
Cmo18g00155 597 Gene3D Transferase(Phosphotransferase) domain 1 111 292 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00886 Cmo18g00155 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01376 Cmo-Chr15:9374276 Cmo18g00155 Cmo-Chr18:1078095 1.05E-154 dispersed
Cmo17g00224 Cmo-Chr17:1320289 Cmo18g00155 Cmo-Chr18:1078095 7.44E-173 dispersed
Cmo18g00155 Cmo-Chr18:1078095 Cmo20g00336 Cmo-Chr20:1658918 1.38E-160 dispersed
Cmo13g00886 Cmo-Chr13:7991434 Cmo18g00155 Cmo-Chr18:1078095 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75037 PF00069 Pkinase 1.40E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00155 K08867 - csv:101206177 1018.84