Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00157 ATGGAATCGAGGATTAGCAGAGAGAATACCAGAGAAATGGCGAAATTAGGGCACATAATCGTGCAAAAGAGACTCGCAAATTCTCGGCCCAAGGCTCAGCAGCAGGCGCCCGATTTGACTGATTTTATGAACGATATGTTCTTCGGAAGCGTAAATAAGGAGAAGAAGGCCTATAATTTGACCGGTGATGAAAATGAAGAAGAAGATGAAGAAGAACAAGAAGATTCGTTTGATCGGAGTAATAGAAGTAGAAATAGCCTATTGACGGAGGAGTGGCTGGATGAGGCGCGGCGGTTGGTGGCTTCTTCTCCTTCGCGGCCTAATTCGCCGGCTCGGTTCGTCGGATCGCCGAGGTTTGCAGCGGCCAACGGCAGATCGTCGGCTTTGATCAATGATCGGAGAGATCCACTCTCAAGGTCCGCTAGAAGGCACAGAGCTGTGGACAATTTCAGCGGTGAAATCCTCTCTAAAGTTGTTCGCCATAGCCGCAACAAATCAGAATCCTTCTCAGTCTCCTCCGCCGCCGTGGAGGAGCCGATAAATCCCTCTTCCGCCGTTCAAAAATGGATATCCAACGTCCTCAAACCCTCCAATCCCACACTCTCCGATCCTCCTCCCACTACTCGCAAATCTCGGTTCCACACCGACCTTCCCCCTTCTCGCCTCCCGATTCCTCCGCCGGATGTCCTTCTTTCTCCGCCCAAGACCCTAACGAATCCGCCGCCGAGAAGAACGGTCTCGTCGTCGGCCTGTTCGATTCAATCGATTAGACCTAAATCCAATCTAAATGAGTTCTCGAGGGACGATTCTGAAGATCTGGAGTTTGGCCTTAATGGGTTCCTTAAAGAGCAGCGTAGCAAAATTCAGCAAATCTCGGATGGGCAGCTTGATGTTGAAGTTAAAATCATTCTATCCGGACCTTCAAACAGCACTAGTTCAATGGTAGCGGCAGTGTGCTATGCTTGGCTACTAGAGAACAAGATGAAGCAGAGTAATGCAGAGAGCGGCCGAGAGTGTCTTGTGGTGCCTGTGATGAATATGCAGAGGGGAAATATGTGGAACCAACGGCAGGTTGCTTGGCTCTTTTATCACCTTGGACTTGATGCTTCCTCGATTCTTTTCACTGATGAGGTGGACTTAGAAAGTCTGATGGTGACTGGTCGAACTAGTGTCCTCGTCGTAGGGCAAGATGTCCTTAAGATGAGTGATGGGGTTGGATCTCAGTGCACCATTCTTACTGATAACTATTGTGAGGATGCCTATCATTTGCTTCAAACTCCTTTGTTGAAGAATCTCATGCTCGCAGGAATTCTGTTGGACACAAAAAATCTTGATGGGTCAGCTCAATTATCGATGACGAGAGATGCCGAGGCTGTCCAGTTGCTATCGGTTGGCTCGGCACCAAATTGTAGGAACGGACTTTATGATCAGTTGATGCGAGTTCAAAAGGAGCGTCCATTTTTGGATGCCTTGCAACAAAGTTATGGAAAGCCTCCTGATGACGGTAGCAACGATGGCGCGGGGCATGTAGAGCGTATTATGGAGAGGAATCGAACATCCATCTCACCCCATGATGACACAATTAACCAACAAAAGAAACCTAATGATTTTGGAACTGCCAAAACTTGCAGGGCTTCGCCGAAATCCGCTAAACCGAGTTTGTTACCTATTCAAACACCGGCTAGAGAAACACCCAACATATCTCGTGGAAAGAATAAAAACTTCCTGGCAAAATGGCTCCAAGATCTCCTCTCAGCTAGAGATTCAGTAGCTCTCCCCGAGTACGATCGCTCGAAATCCACCGTGAGAATGCAAAATTTTCGCAGAATTAATCAATTGGTACGACGGCAAAGTCCCGACGCTCATTTCAAGTCGATTAGAGGTTACCCTCTAAATGGAGATGCTAGCTGTTGCTGCTCGGCGTCAATGTCGATGGAAAAGAGTTTTACTAGCCTTCGTCTTTTTGGGAATCCATATGAGTCTTTGAATGGTTCCCTCTTCAGGTCTTTCTCGAAGTTGGGCAATCAATATCCGGAAGCCTTCAAAGATATGGGCTCTCAAATGGAATTTTTGCCTTCGGTAAAGCGTGTATCTTCAACTTGTCCAGCATTCCAAAGTCCAAAGAAACATTTATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCGACAACAAGTTCAATGGAATCAGCTCCACAAGGATCTTCGGGAATTGATACCGATATAACTCCTCGCATCAAATTTAAGAGGCTTGATAAAACTTCAAAACACATAATGCAGATTCTAGACAAGGAAGCTGTTGAGGAGGTAAAAGCAAAGAGAGAAATTCCAGACATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTGTCTCAACGTTGAAAGGCATTGTAATTGCCAGACGGAACGCTGGTCTAAACACAACTTTTAGATTAAGGAGGGTAGTTGCTGGTGTTGGGATTGAGTCTCTCTTCCCTTTATACTCACCAAACATAAAAGAGATTACGGTGTTGGACAAGAAGAAAGTGCGGAGGGCCAAGCTTTACTATCTTAGGGACAAAATGAAATCGCTTAAGAAGCATTAG 2619 46.39 MESRISRENTREMAKLGHIIVQKRLANSRPKAQQQAPDLTDFMNDMFFGSVNKEKKAYNLTGDENEEEDEEEQEDSFDRSNRSRNSLLTEEWLDEARRLVASSPSRPNSPARFVGSPRFAAANGRSSALINDRRDPLSRSARRHRAVDNFSGEILSKVVRHSRNKSESFSVSSAAVEEPINPSSAVQKWISNVLKPSNPTLSDPPPTTRKSRFHTDLPPSRLPIPPPDVLLSPPKTLTNPPPRRTVSSSACSIQSIRPKSNLNEFSRDDSEDLEFGLNGFLKEQRSKIQQISDGQLDVEVKIILSGPSNSTSSMVAAVCYAWLLENKMKQSNAESGRECLVVPVMNMQRGNMWNQRQVAWLFYHLGLDASSILFTDEVDLESLMVTGRTSVLVVGQDVLKMSDGVGSQCTILTDNYCEDAYHLLQTPLLKNLMLAGILLDTKNLDGSAQLSMTRDAEAVQLLSVGSAPNCRNGLYDQLMRVQKERPFLDALQQSYGKPPDDGSNDGAGHVERIMERNRTSISPHDDTINQQKKPNDFGTAKTCRASPKSAKPSLLPIQTPARETPNISRGKNKNFLAKWLQDLLSARDSVALPEYDRSKSTVRMQNFRRINQLVRRQSPDAHFKSIRGYPLNGDASCCCSASMSMEKSFTSLRLFGNPYESLNGSLFRSFSKLGNQYPEAFKDMGSQMEFLPSVKRVSSTCPAFQSPKKHLFQLAEIAAPFSSRGIATTSSMESAPQGSSGIDTDITPRIKFKRLDKTSKHIMQILDKEAVEEVKAKREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVGIESLFPLYSPNIKEITVLDKKKVRRAKLYYLRDKMKSLKKH 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1086006 1094708 - CmoCh18G001570.1 Cmo18g00157 401930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00157 872 SUPERFAMILY Translation proteins SH3-like domain 769 867 IPR008991 -
Cmo18g00157 872 MobiDBLite consensus disorder prediction 517 569 - -
Cmo18g00157 872 MobiDBLite consensus disorder prediction 99 119 - -
Cmo18g00157 872 MobiDBLite consensus disorder prediction 523 537 - -
Cmo18g00157 872 Gene3D - 274 404 - -
Cmo18g00157 872 Gene3D - 752 872 IPR038657 -
Cmo18g00157 872 Pfam Ribosomal protein L19 770 867 IPR001857 GO:0003735|GO:0005840|GO:0006412
Cmo18g00157 872 PANTHER BNIP - RELATED 17 216 - -
Cmo18g00157 872 PANTHER BNIP - RELATED 230 580 - -
Cmo18g00157 872 PRINTS Ribosomal protein L19 signature 767 796 IPR001857 GO:0003735|GO:0005840|GO:0006412
Cmo18g00157 872 PRINTS Ribosomal protein L19 signature 826 849 IPR001857 GO:0003735|GO:0005840|GO:0006412
Cmo18g00157 872 MobiDBLite consensus disorder prediction 219 240 - -
Cmo18g00157 872 MobiDBLite consensus disorder prediction 195 250 - -
Cmo18g00157 872 MobiDBLite consensus disorder prediction 57 83 - -
Cmo18g00157 872 PANTHER - 230 580 - -
Cmo18g00157 872 PANTHER - 17 216 - -
Cmo18g00157 872 TIGRFAM rplS_bact: ribosomal protein bL19 771 866 IPR001857 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00157 - - - cmos:111456732 1100.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00832 Cmo-Chr6:4548421 Cmo18g00157 Cmo-Chr18:1086006 2.69E-38 dispersed
Cmo13g00254 Cmo-Chr13:2124761 Cmo18g00157 Cmo-Chr18:1086006 6.02E-54 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g836 . . . . Bpe12g00672 . . . . Cmo18g00157 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00149 . . . . . . Bma08g00079 . . . . Cma18g00195 . Car18g00188 Cpe09g00999 . . . . . . . . Cla01g01348 Cam01g1383 Cec01g1411 Cco01g1508 Clacu01g1414 Cmu01g1317 Cre01g1225 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004587 2 3 1 0 1 1 1 1 1 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 2 1 1 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00157 Cmo_Chr18 FPKM 18.042425 21.698151 6.04036 4.781101 17.625624 14.249147 13.903448 2.272919 3.851048 4.34795