Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00162 ATGGCAGCTCTTTCTAACAAATATGGCCCTCTAATGCTCCTAAAGCTTGGCCAGACACAAGCCCTTGTGGTTTCATCACCAAAAATAGCTAAAGAAGTGATGAAGACCCATGACATCATATTCTCCAACAGACTACAAACTACTGCCTCAAAGAAATTGCTGTACCAATGTCAAGACATTGCCTTTGTTCATTGTAGTGAGTACTGGAGACAAGCCAGGAAAGTGTGCGCTCTTGAGCTTTTTAGTGTCAAAAGAGTGGACTCCTTTCAGTACGTAAGGGATGAGGAAGTTGGTGGGCTCATGGACAGGATTCGTAAGGCTAGTGTGGGCGGTGAGGCTGTGAATCTAAGTCAGTTGTTCCTTCAAACATCGAACAATATAGTGTCTAGATGCGTTTTGGGAGAGAAATTTGAGGATGAAAATGGGAATAGTCAATTTGGAGAGACAGCCAGAAAGCTTATGGTGCTAATTGTGGCGTTTTGTGTAGCTGATCTTTTTCCTTCTCTTTGGTGGATTGATATTATTAGAGGGTTCAATAAGGAGTTGAAAGATTGCTTCAAAACATTGGATACATTTTTTAGTAAAGTGGTTGAAGAACACAAGGAAAAAATAAGAGCCGGTGTTCTAACGGATGAATTTAAGAAGGATTTTGTGGATATCATGTTGCAGCTCCAACAGGATGACATGGGTGACTATCATTTCTCTTCCGACCAGCTCAAAGCAATCATACTGGACATGTTTGTTGGTGCCAGTGACACAACAGCGACGGTACTAGAGTGGACAATGACAGAGCTGATGAGAAACCCAGCCGCCAGGAAGAAAGCCCAAGAGGAAGTAAGAACAATAATAGGAAAGAAACAAAAGATTGAAGTCGAAGATATACAAAAGATGGAGTATATTCACTGTATCGTAAAGGAATCTCTAAGGCTCCACCCGCCCGTTCCTCTGCTAGTGCCACGAGAAACAACAGCAGATGTGGAGATTGACGGCTACCATATTCCATCAAAAACAGGAGTCTTTGTGAACGTCTGGAAAATCCAAAGGGATCCCGAATATTGGAAGAATCCAACCGAGTTCATTCCGGAGAGGTTTATGGATAACTGTTCAGCGGATTACAAAGGCCAAGACTATGAGTTTATTCCATTTGGGAGTGGGAGAAGGAAGTGCCCAGGAATGTCATTTGGGGACATGTTTGTTGGTGCCAGTGACACAACAGCGACGGTACTAGAGTGGACAATGACAGAGCTGATGAGAAACCCAGCCGCCAGGAAGAAAGCCCAAGAGGAAGTAAGAACAATAATAGGAAAGAAACAAAAGATTGAAGTCGAAGATATACAAAAGATGGAGTATATTCACTGTATCGTAAAGGAATCTCTAAGGCTCCACCCGCCCGTTCCTCTGCTAGTGCCACGAGAAACAACAGCAGATGTGGAGATTGACGGCTACCATATTCCATCAAAAACAGGAGTCTTTGTGAACGTCTGGAAAATCCAAAGGGATCCCGAATATTGGAAGAATCCAACCGAGTTCATTCCGGAGAGGTTTATGGATAACTGTTCAGCGGATTACAAAGGCCAAGACTATGAGTTTATTCCATTTGGGAGTGGGAGAAGGAAGTGCCCAGGAATGTCATTTGGGGTTTCTTCATTTGAACAGGCATTGGCTAATCTTCTCCATTGGTTTGATTGGAAGCTTCCCAGTGGCTGTGAATTGAGCGTTGAAGAAGAAGATGGGCTCACTGTTCACAAGAAAACCCCCCTTGTTCTTAACCCAATGCCATGTTTCTAA 1788 43.34 MAALSNKYGPLMLLKLGQTQALVVSSPKIAKEVMKTHDIIFSNRLQTTASKKLLYQCQDIAFVHCSEYWRQARKVCALELFSVKRVDSFQYVRDEEVGGLMDRIRKASVGGEAVNLSQLFLQTSNNIVSRCVLGEKFEDENGNSQFGETARKLMVLIVAFCVADLFPSLWWIDIIRGFNKELKDCFKTLDTFFSKVVEEHKEKIRAGVLTDEFKKDFVDIMLQLQQDDMGDYHFSSDQLKAIILDMFVGASDTTATVLEWTMTELMRNPAARKKAQEEVRTIIGKKQKIEVEDIQKMEYIHCIVKESLRLHPPVPLLVPRETTADVEIDGYHIPSKTGVFVNVWKIQRDPEYWKNPTEFIPERFMDNCSADYKGQDYEFIPFGSGRRKCPGMSFGDMFVGASDTTATVLEWTMTELMRNPAARKKAQEEVRTIIGKKQKIEVEDIQKMEYIHCIVKESLRLHPPVPLLVPRETTADVEIDGYHIPSKTGVFVNVWKIQRDPEYWKNPTEFIPERFMDNCSADYKGQDYEFIPFGSGRRKCPGMSFGVSSFEQALANLLHWFDWKLPSGCELSVEEEDGLTVHKKTPLVLNPMPCF 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1148717 1150762 - CmoCh18G001620.1 Cmo18g00162 401935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00162 595 Coils Coil 423 443 - -
Cmo18g00162 595 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 533 542 IPR017972 GO:0005506|GO:0016705
Cmo18g00162 595 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 382 391 IPR017972 GO:0005506|GO:0016705
Cmo18g00162 595 PRINTS E-class P450 group I signature 452 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 PRINTS E-class P450 group I signature 530 540 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 PRINTS E-class P450 group I signature 5 24 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 PRINTS E-class P450 group I signature 540 563 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 PRINTS E-class P450 group I signature 493 517 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 PRINTS E-class P450 group I signature 29 50 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 PRINTS E-class P450 group I signature 238 255 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 PRINTS E-class P450 group I signature 123 141 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 PRINTS E-class P450 group I signature 258 284 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 SUPERFAMILY Cytochrome P450 2 398 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 PANTHER CYTOCHROME P450 71B11-RELATED 2 395 - -
Cmo18g00162 595 Gene3D Cytochrome P450 1 395 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 Pfam Cytochrome P450 395 586 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 Pfam Cytochrome P450 2 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 SUPERFAMILY Cytochrome P450 396 592 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 Gene3D Cytochrome P450 396 590 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 PANTHER CYTOCHROME P450 71B11-RELATED 396 593 - -
Cmo18g00162 595 Coils Coil 272 292 - -
Cmo18g00162 595 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 396 593 - -
Cmo18g00162 595 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 2 395 - -
Cmo18g00162 595 PRINTS P450 superfamily signature 302 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 PRINTS P450 superfamily signature 380 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00162 595 PRINTS P450 superfamily signature 249 266 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00162 Cmo-Chr18:1148717 Cmo18g00169 Cmo-Chr18:1173597 7.99E-123 dispersed
Cmo18g00174 Cmo-Chr18:1200899 Cmo18g00162 Cmo-Chr18:1148717 2.03E-17 dispersed
Cmo18g00162 Cmo-Chr18:1148717 Cmo18g00164 Cmo-Chr18:1153072 3.96E-25 proximal
Cmo13g00794 Cmo-Chr13:7543201 Cmo18g00162 Cmo-Chr18:1148717 6.17E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00162 K20617 - csv:101207136 576.244