Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00165 ATGGCAGCTCTTTCTAACAAATATGGCCCTCTAATGCTCCTAAAGCTTGGCCAGAGGCAAACCCTTGTGGTTTCATCAGCAAAAATGGCTAGAGAAGTGATGAAGAGCCATGACATCATATTCTCCAACAGGCCCCAAACCACTGCCGCACAGGAACTGCTGTACCAATGTCAAGACATTGTCTTTGGTCAATATGGTGCGTACTGGAGACAAGCCAGGAAAGTGTGCGCTCTTGAGCTTTTTAGTGTCAAAAGAGTGATCTCCTTTCAGCACGTAAGGGATGAGGAAGTTGGTGGGCTGATGGACAGGATTAGTGAAGCTAGTGTGAGCGGTGAGACTGTGAATCTTAGCCAGTTGTTCCTTCAAACCTCGAACAATATAGTGTCCAGATGTGTTTTGGGAGAGAAATTTGAGGATGAAAATGGGAATAGTCGATTTGGGGACATAACCAGAAGGAGTATGGTGCTAATTGCGGCGTTTTGTGTAGCTGATTTTTTTCCTTCTCTTTGGTGGATTGATGTCATTAGAGGGTTCAATAAGGAGTTGAAAGATTGTTCCAAAATATTGGATACATTTGTTAGTAAAGTGGTTGAAGAACACAAAGCAAAGAAAAGAGATGGTGTTGGAACTGATGAACCTAAGAAGGATTTTGTGGATATCATGTTGCAGCTCCAACAGGATGACATGGTTGACTATCATTACTCTCCTGACAACCTCAAAGCAACGTTGCTGGACATGTTTGTTGGAGGAAGTGACACAACAGCAACGGTATTGGAGTGGACAATGACAGAGCTGATGAGAAACCCAGCCGCCATGAAGAAAGTTCAAGAGGAAGTAAGAACAATAACAGGAAAGAAACCAAAGATCGAAGCGGAAGATATTCAAAAAATGGAGTACATGCACTCTATCATAAATGAATCTTTGAGGCTCCACCCGCCAATTCCTCTACTAGTGCCACGAGAAACAACAGCAGATGTGGAGATCGATGGCTACCATATTCCATCAAAAACAAGAGTTTTTGTGAATGCTTGGAAAATCCATAGGGATCCCGAATATTGGCTCAATCCAAACGAGTTCATTCCAGAGAGGTTTATGGATAATAGATCCGTGGATTACAAAGGTCAAAACTACGAGTATATTCCGTTTGGGAGTGGAAGAAGGAAGTGCCCAGGAATGTCATTTGGGGTTTCTTCATTTGAACAGGCATTGGCTAATCTTCTCCATTGGTTTGATTGGAAGCTTCCCAGTGGCTGTGAATTGAGCGTTGAAGAAGAAAATGGCATCACTGTTCGCAAGAAAACCCCCCTCGTCCTTAACCCAATACCATGGTTCTAA 1335 43.07 MAALSNKYGPLMLLKLGQRQTLVVSSAKMAREVMKSHDIIFSNRPQTTAAQELLYQCQDIVFGQYGAYWRQARKVCALELFSVKRVISFQHVRDEEVGGLMDRISEASVSGETVNLSQLFLQTSNNIVSRCVLGEKFEDENGNSRFGDITRRSMVLIAAFCVADFFPSLWWIDVIRGFNKELKDCSKILDTFVSKVVEEHKAKKRDGVGTDEPKKDFVDIMLQLQQDDMVDYHYSPDNLKATLLDMFVGGSDTTATVLEWTMTELMRNPAAMKKVQEEVRTITGKKPKIEAEDIQKMEYMHSIINESLRLHPPIPLLVPRETTADVEIDGYHIPSKTRVFVNAWKIHRDPEYWLNPNEFIPERFMDNRSVDYKGQNYEYIPFGSGRRKCPGMSFGVSSFEQALANLLHWFDWKLPSGCELSVEEENGITVRKKTPLVLNPIPWF 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1158785 1160761 - CmoCh18G001650.1 Cmo18g00165 401938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00165 444 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 2 443 - -
Cmo18g00165 444 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 382 391 IPR017972 GO:0005506|GO:0016705
Cmo18g00165 444 PRINTS E-class P450 group I signature 301 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00165 444 PRINTS E-class P450 group I signature 342 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00165 444 PRINTS E-class P450 group I signature 5 24 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00165 444 PRINTS E-class P450 group I signature 29 50 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00165 444 PRINTS E-class P450 group I signature 123 141 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00165 444 PRINTS E-class P450 group I signature 389 412 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00165 444 PRINTS E-class P450 group I signature 379 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00165 444 PRINTS E-class P450 group I signature 238 255 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00165 444 PRINTS E-class P450 group I signature 258 284 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00165 444 Pfam Cytochrome P450 2 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00165 444 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 2 443 - -
Cmo18g00165 444 PRINTS P450 superfamily signature 380 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00165 444 PRINTS P450 superfamily signature 302 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00165 444 PRINTS P450 superfamily signature 249 266 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00165 444 Gene3D Cytochrome P450 1 439 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00165 444 SUPERFAMILY Cytochrome P450 2 441 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00165 K20617 CYP71A; cytochrome P450 family 71 subfamily A K00495 csv:101207136 652.514
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00092 Cmo18g00165 CCT
Cmo13g00794 Cmo18g00165 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00165 Cmo-Chr18:1158785 Cmo18g00169 Cmo-Chr18:1173597 0 dispersed
Cmo18g00172 Cmo-Chr18:1186032 Cmo18g00165 Cmo-Chr18:1158785 4.38E-31 dispersed
Cmo18g00164 Cmo-Chr18:1153072 Cmo18g00165 Cmo-Chr18:1158785 6.41E-57 tandem
Cmo18g00165 Cmo-Chr18:1158785 Cmo18g00166 Cmo-Chr18:1163363 3.77E-98 tandem
Cmo10g00091 Cmo-Chr10:399381 Cmo18g00165 Cmo-Chr18:1158785 2.43E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g851 . . . Bda15g00535 . . . . Cmo13g00794 Cmo18g00165 . . . . . . . Bhi02g00597 . . . . . . Cla06g01705 . . . . . . . . . . Lsi02g00426 Csa01g00905 Chy12g01223 Cme12g01649 Blo13g00153 Blo15g00247 . . Bpe07g00863 . . . . Cmo10g00092 . Cma13g00766 . . . . . . . . . . . . Cla03g00297 . . . . . . . . Chy02g02614 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00165 Cmo_Chr18 FPKM 2.56 4.578212 17.818203 19.775494 4.153335 3.341863 4.253103 6.833388 7.341366 7.625982