Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00168 ATGGCAGCTCTTTCCAACAAATATGGCCCTCTCATGCTCCTAAAGCTTGGTCAGAAACAAGCCCTTGTGGTTTCATCACCAAAAATAGCTAAAGAAGTGATGAAGACCCATGACATCAAATTCTCCAACAGACTACAAACCACTGCCTCAAAGAAATTGCTGTACCAATGTCAAGACATTGCCTTTGTTCACTATGGGGAGTATTGGAGACAAGCCAGGAAAGTGTGCGCTCTTGAGCTTTTCAGTGTCAAAAGAGTGGACTCCTTTCAGTACCTCCAACAGGACGACATGGTTGACTATAATTTCTCTTCCGACAATCTCAAAGCAATCATACTGGACATGTTTGTTGGTGGTAGTGACACAACAGCGACAGTACTAGAGTGGACAATGACAGAGCTGATGGGAAACCCAGCAGCCATGAAGAAAGCCCAAGAGGAAGTAAGAACAATAATAGGAAAGAAATCAAAGATCGAAGCCGAAGATATTCAAAAGATGGAGTATATTCACTGTGTCATAAAAGAGTCTCTGAGGCTCCACCCGCCAGTTCCTCTGCTAGTGCCACGAGAAACAGCAGAAGATGTGGAGATCGACGGCTATCATATTCCATCAAAAACAAGAGTTTTTGTGAATGCCTGGAAAATTCAAAGGGATCCCGAGTATTGGAAGAATCCAACCGAGTTCATTCCAGAGAGGTTTATAGATAACCGTTCAGTGGATTACAAAGGCCAAGACTATGAGTTTATTCCATTTGGGAGTGGGAGAAGGAAGTGCCCAGGAATGTCATTTGGGGTTGCTTCATTTGAACAAGCATTGGCTAATCTTCTCCATTGGTTTGATTGGAAGCTTCCCAGTGGCTGTGAATTGAGCGTTGAAGAAGAAGATGGGCTCACTGTTCGCAAGAAAACCCCCCTCATTCTTAATCCAATGCCATGTTTCTAA 939 43.56 MAALSNKYGPLMLLKLGQKQALVVSSPKIAKEVMKTHDIKFSNRLQTTASKKLLYQCQDIAFVHYGEYWRQARKVCALELFSVKRVDSFQYLQQDDMVDYNFSSDNLKAIILDMFVGGSDTTATVLEWTMTELMGNPAAMKKAQEEVRTIIGKKSKIEAEDIQKMEYIHCVIKESLRLHPPVPLLVPRETAEDVEIDGYHIPSKTRVFVNAWKIQRDPEYWKNPTEFIPERFIDNRSVDYKGQDYEFIPFGSGRRKCPGMSFGVASFEQALANLLHWFDWKLPSGCELSVEEEDGLTVRKKTPLILNPMPCF 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1168228 1169685 - CmoCh18G001680.1 Cmo18g00168 401941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00168 312 Gene3D Cytochrome P450 96 307 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00168 312 PRINTS E-class P450 group I signature 257 280 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00168 312 PRINTS E-class P450 group I signature 5 24 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00168 312 PRINTS E-class P450 group I signature 169 187 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00168 312 PRINTS E-class P450 group I signature 247 257 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00168 312 PRINTS E-class P450 group I signature 29 50 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00168 312 PRINTS E-class P450 group I signature 210 234 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00168 312 SUPERFAMILY Cytochrome P450 2 308 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00168 312 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 92 310 - -
Cmo18g00168 312 Gene3D Cytochrome P450 1 95 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00168 312 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 2 97 - -
Cmo18g00168 312 PRINTS P450 superfamily signature 117 134 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00168 312 PRINTS P450 superfamily signature 170 181 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00168 312 PRINTS P450 superfamily signature 248 257 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00168 312 Coils Coil 140 160 - -
Cmo18g00168 312 Pfam Cytochrome P450 2 85 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00168 312 Pfam Cytochrome P450 91 302 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00168 312 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 250 259 IPR017972 GO:0005506|GO:0016705
Cmo18g00168 312 PANTHER CYTOCHROME P450 71B11-RELATED 92 310 - -
Cmo18g00168 312 PANTHER CYTOCHROME P450 71B11-RELATED 2 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00168 K20617 CYP71A; cytochrome P450 family 71 subfamily A - csv:101207136 363.999
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00091 Cmo18g00168 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00166 Cmo-Chr18:1163363 Cmo18g00168 Cmo-Chr18:1168228 4.15E-101 dispersed
Cmo18g00168 Cmo-Chr18:1168228 Cmo18g00173 Cmo-Chr18:1189973 5.43E-36 dispersed
Cmo18g00171 Cmo-Chr18:1185538 Cmo18g00168 Cmo-Chr18:1168228 5.11E-42 dispersed
Cmo18g00168 Cmo-Chr18:1168228 Cmo18g00169 Cmo-Chr18:1173597 1.19E-46 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g854 . . . Bda15g00533 . . . . . Cmo18g00168 Cma10g00089 . . . . . Cpe04g01587 Bhi02g00596 . . . . . . . . . . . . . . . . . Lsi02g00427 Csa01g00906 Chy12g01222 Cme12g01648 . . . . . . . . . Cmo10g00091 . . Cma18g00201 . . . . Bhi08g01673 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00168 Cmo_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.550421