Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00169 ATGGATTTCCCAACGAAGATCCACCAACAATTTCAAGCGCTCAATCCCATCTCTTCATCTCTGTGCCTTTTCTTCTTCTTCATAGTTCTGCTAAAGCTCTACAAACGCAAGAAACCCAACTTCCCTCCTTCACCACCAAGGCTACCCATCATAGGCAACCTCCATCAATTAGGTGCCCTGCCACACCAATCCATGGCAGCTCTTTCCAATAAATATGGCCCTCTAATGCTCCTAAAGCTTGGCCAGAAGCATACCCTCGTGGTTTCATCAGCAAAAATGGCTAGAGAAGTGATGAAGACCCAAGACATCAAATTCTCCAACAGGCCCCAAACTACTGCTGCATACGAATTGCTGTACCAATGTCAAGACATTGGCTTTACTCAATATGGTGAGTATTGGAGACAAGCCAGGAAAGTGTGCGCTCTTGAGCTTTTTAGTGCCAAAAGAGTGGACTCTTTTCAGTACGTAAGGGATGATGAAATTGGTGGGCTGATGGACAGGATTCGTAAGGCTTGTGTGGGCGTTGAGGCTGTGAATCTAAGCCAATTGTTTCTTCAAACCTCGAACAATATAGTGTCTAGATGTGTTTTGGGAGAGAAATTTGAAGATGAAAATGGGAATAGTAGATTTGGAGATGCAGCCAGAAAGGTTATGGTGCTAATGGTGGCGTTTTGTGTAGCTGATCTTTTTCCTTCTCTTTGGTGGATTGATACTATTAGAGGGTTCAATAAGCAGTTGGAAGATTGCTTCAAAAGATTGGATACATTTTTTAGTAAAGTGGTTGAAGAACACAAGGAAAAGATAAGAGATGGTGTTCTAACTGATGAATCTAAGAAGGATTTTGTGGATATCATGTTGCAGCTCCAACGGGATGGCATGGTTGACTATCATTTCTCTCCAATCAACCTCAAAGCAATCGTACTGGACATGTTTGTGGGAGGAAGTGACACAACAGCAACAGTACTGGAGTGGACTATGACAGAGCTGATGAGAAACCCAGCAGTCATGAAGAAAGCTCAAGAGGAAATAAGAACAATAATAGGAAAGAAATCGAAGATCGAAGCTGAAGATATTCAAAAGATGGAGTATATGCACCGTGTCATAAATGAATCTCTGAGGCTCCACCCGCCAATTCCTCTGCTAGTGCCACGAGAAACAACAACTGATGTGGAGATTGACAGCTACCATATTCCATCAAAGACAAGAGTTTTTGTGAACGCATGGAAAATCCAAAGGGATCCTGAAAATTGGCACAATCCAAACGAATTCATTCCAGAGAGATTTATGGATAACAATTCAATAGATTACAAAGGTCAAGACTATGAGTTTATTCCATTTGGGAGTGGGAGAAGGAAGTGCCCAGGATTGTCATTTGGGGCTGCTTCATTTGAACATGCATTGGCTAATCTTCTCCATTGGTTTGATTGGAAGCTTCCCAGTGACTGTGCTCTGAGCGTTGAAGAAGAAAATGGGCTCACTGTTCGCAAGAAAACCCCCCTCCTTCTTAACCCAATGCCATGTTTCTAA 1527 42.57 MDFPTKIHQQFQALNPISSSLCLFFFFIVLLKLYKRKKPNFPPSPPRLPIIGNLHQLGALPHQSMAALSNKYGPLMLLKLGQKHTLVVSSAKMAREVMKTQDIKFSNRPQTTAAYELLYQCQDIGFTQYGEYWRQARKVCALELFSAKRVDSFQYVRDDEIGGLMDRIRKACVGVEAVNLSQLFLQTSNNIVSRCVLGEKFEDENGNSRFGDAARKVMVLMVAFCVADLFPSLWWIDTIRGFNKQLEDCFKRLDTFFSKVVEEHKEKIRDGVLTDESKKDFVDIMLQLQRDGMVDYHFSPINLKAIVLDMFVGGSDTTATVLEWTMTELMRNPAVMKKAQEEIRTIIGKKSKIEAEDIQKMEYMHRVINESLRLHPPIPLLVPRETTTDVEIDSYHIPSKTRVFVNAWKIQRDPENWHNPNEFIPERFMDNNSIDYKGQDYEFIPFGSGRRKCPGLSFGAASFEHALANLLHWFDWKLPSDCALSVEEENGLTVRKKTPLLLNPMPCF 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1173597 1175800 - CmoCh18G001690.1 Cmo18g00169 401942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00169 508 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 15 506 - -
Cmo18g00169 508 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00169 508 PRINTS E-class P450 group I signature 93 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00169 508 PRINTS E-class P450 group I signature 187 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00169 508 PRINTS E-class P450 group I signature 302 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00169 508 PRINTS E-class P450 group I signature 322 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00169 508 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00169 508 PRINTS E-class P450 group I signature 406 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00169 508 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00169 508 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00169 508 PANTHER CYTOCHROME P450 71B11-RELATED 15 506 - -
Cmo18g00169 508 Gene3D Cytochrome P450 28 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00169 508 PRINTS P450 superfamily signature 313 330 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00169 508 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00169 508 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00169 508 Coils Coil 336 356 - -
Cmo18g00169 508 Pfam Cytochrome P450 42 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00169 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Cmo18g00169 508 SUPERFAMILY Cytochrome P450 42 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00169 K20617 CYP71A; cytochrome P450 family 71 subfamily A - csv:101207136 717.227
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g00066 Cmo18g00169 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00794 Cmo-Chr13:7543201 Cmo18g00169 Cmo-Chr18:1173597 0 dispersed
Cmo14g01218 Cmo-Chr14:10363491 Cmo18g00169 Cmo-Chr18:1173597 9.33E-133 dispersed
Cmo18g00162 Cmo-Chr18:1148717 Cmo18g00169 Cmo-Chr18:1173597 7.99E-123 dispersed
Cmo18g00165 Cmo-Chr18:1158785 Cmo18g00169 Cmo-Chr18:1173597 0 dispersed
Cmo18g00169 Cmo-Chr18:1173597 Cmo18g00175 Cmo-Chr18:1203362 0 dispersed
Cmo18g00167 Cmo-Chr18:1163860 Cmo18g00169 Cmo-Chr18:1173597 9.24E-163 proximal
Cmo18g00168 Cmo-Chr18:1168228 Cmo18g00169 Cmo-Chr18:1173597 1.19E-46 tandem
Cmo18g00169 Cmo-Chr18:1173597 Cmo18g00170 Cmo-Chr18:1178747 1.67E-88 tandem
Cmo11g00066 Cmo-Chr11:310428 Cmo18g00169 Cmo-Chr18:1173597 6.59E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g856 . . . . . . . . . Cmo18g00169 . Cma11g00063 . . . . . Bhi02g00595 . . . . . . . . . . . . . . . . Cone19ag0174 Lsi02g00430 Csa01g00908 Chy12g01221 Cme12g01644 Blo13g00162 . . . . . . . . . Cmo11g00066 . . . . . . Bhi08g01677 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00169 Cmo_Chr18 FPKM 15.060164 18.971968 21.139568 22.692091 23.269749 22.294737 24.453682 17.022104 17.004421 16.066345