Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00175 ATGGCAGCTCTTTCTAACAAACATGGCCCTCTAATGCTCCTAAAGCTTGGCCAGACACAAGCCCTTGTGGTTTCATCAGCAAAAATGGCTAGAGAAGTGATGAAGAGCCATGACATCATATTCTCCAACAGGCCCCAAACTACTGCTGCACACGAATTGATGTACCTATGTCAAAATATTGGCTTTGCTCAATATGGTGAGTATTGGAGACAAGCCAGGAAAGTGTGCGCTCTTGAGCTTTTTAGTGCCAAAAGAGTGGATTCCTTTCAGTACGTAAGGGATGATGAAGTTGGTGGATTGATGGACAGGATTGGCAAGGCTTGTGTGGGTGGTGAGGCTGTGAATCTTAGCCAGTTGTTCCTTCAAACCTCGAGCAATATAGTGTCGAGATGCGTTTTGGGTGGGAAATTTGAGGGTGAAAATGGGAATAGTCGATTTGGAGACACAACCAAAAAGTTTTTTCTGCTACTCACGGCGTTTTGTGTAGCTGATTTTTTCCCTTGTCTTTGGTGGATTGATACTATTAGAGGGTTCAATAAGGAGTTGAAAGATTGCTTCAAAGCATTGGATACATTTTTTAGTAAAGTGGTTGAAGAACACAAGGAAAAGATAAGAGATGGTGTTGGAACTGATGAATCTAAGAAAATTTTTGTGGATATCATGTTGCAGCTCCAACAGGATGACATGGTTGACTATCCTTTCTCTCCCGACAACCTCAAAGCAATCTTACTGGACTTGTTTGTTGCAGGAAGTGACACAACAGCAGCAGTACTGGAGTGGACAATGACAGAGCTGATGAGAAATCCAGCAGCCATGAAGAAAGCTCAAGAAGAAGTAAGAACAATAATAGAAAAGAAATCAAAGATCGAAGCCGAAGATATTCAAAAGATGGAGTATATTCACTGTGTCATAAAGGAATCTCTAAGGCTCCACCCGCCAGGTCCTCTGCTAGTGCCACGAGAAACAACAGCAGATGTGGAGATTGAATGCTACCATATTCCATCAAAAAGAAGAGTTTTTGTGAACGCTTGGAAAATTCAAAGGGATCCCGAGTACTGGCACAATCCAAACGAGTTCATTCCAGAGAGATTTATGGATAATAGTGCAGTGGATTACAAAGGCCAAGACTACGAGTTTATTCCATTTGGGAGTGGGAGAAGGAAGTGCCCAGGATTGTCATTTGGGGTTGCTTCATTTGAACAATCATTGGCTAATCTTCTCCATTGGTTTGATTGGAAGCTTCCCAGTGGCTATGAACTGAGCGTTGAAGAACAAAGTGGGCTCACCGTTTGCAAGAAAATCCCCCTCCTTCTCAATCCAATACCATATATCTAA 1335 42.4 MAALSNKHGPLMLLKLGQTQALVVSSAKMAREVMKSHDIIFSNRPQTTAAHELMYLCQNIGFAQYGEYWRQARKVCALELFSAKRVDSFQYVRDDEVGGLMDRIGKACVGGEAVNLSQLFLQTSSNIVSRCVLGGKFEGENGNSRFGDTTKKFFLLLTAFCVADFFPCLWWIDTIRGFNKELKDCFKALDTFFSKVVEEHKEKIRDGVGTDESKKIFVDIMLQLQQDDMVDYPFSPDNLKAILLDLFVAGSDTTAAVLEWTMTELMRNPAAMKKAQEEVRTIIEKKSKIEAEDIQKMEYIHCVIKESLRLHPPGPLLVPRETTADVEIECYHIPSKRRVFVNAWKIQRDPEYWHNPNEFIPERFMDNSAVDYKGQDYEFIPFGSGRRKCPGLSFGVASFEQSLANLLHWFDWKLPSGYELSVEEQSGLTVCKKIPLLLNPIPYI 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1203362 1206712 - CmoCh18G001750.1 Cmo18g00175 401948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00175 444 Coils Coil 272 292 - -
Cmo18g00175 444 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 382 391 IPR017972 GO:0005506|GO:0016705
Cmo18g00175 444 PRINTS P450 superfamily signature 380 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00175 444 PRINTS P450 superfamily signature 249 266 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00175 444 PRINTS P450 superfamily signature 302 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00175 444 PANTHER CYTOCHROME P450 71B11-RELATED 2 442 - -
Cmo18g00175 444 PRINTS E-class P450 group I signature 5 24 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00175 444 PRINTS E-class P450 group I signature 258 284 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00175 444 PRINTS E-class P450 group I signature 238 255 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00175 444 PRINTS E-class P450 group I signature 379 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00175 444 PRINTS E-class P450 group I signature 29 50 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00175 444 PRINTS E-class P450 group I signature 389 412 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00175 444 PRINTS E-class P450 group I signature 123 141 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00175 444 PRINTS E-class P450 group I signature 301 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00175 444 PRINTS E-class P450 group I signature 342 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00175 444 Pfam Cytochrome P450 2 429 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00175 444 Gene3D Cytochrome P450 1 437 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00175 444 SUPERFAMILY Cytochrome P450 2 441 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g00175 444 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 2 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00175 K20617 CYP71A; cytochrome P450 family 71 subfamily A - csv:101207136 637.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00167 Cmo-Chr18:1163860 Cmo18g00175 Cmo-Chr18:1203362 2.00E-169 dispersed
Cmo18g00169 Cmo-Chr18:1173597 Cmo18g00175 Cmo-Chr18:1203362 0 dispersed
Cmo18g00173 Cmo-Chr18:1189973 Cmo18g00175 Cmo-Chr18:1203362 4.68E-141 dispersed
Cmo18g00174 Cmo-Chr18:1200899 Cmo18g00175 Cmo-Chr18:1203362 4.07E-16 tandem
Cmo18g00175 Cmo-Chr18:1203362 Cmo18g00176 Cmo-Chr18:1208939 7.68E-43 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g861 . . Bda06g00623 Bda15g00532 . . . Bma12g01061 . Cmo18g00175 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0183 . Lsi02g00436 Csa01g00909 Chy12g01217 Cme12g01643 Blo13g00154 Blo15g00245 . . . . . . . . . . . . . . . Bhi08g01683 . . . Hepe07g2179 . . Cla03g00302 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00175 Cmo_Chr18 FPKM 3.184765 4.152786 1.681357 1.805791 9.658422 10.474393 10.012508 0.645063 0.895281 0.929233