Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00180 ATGGCGCCGCCAACACTTTTTCTCTCTCTAATCTCTCTCTTCCTCCTTTCCTCTCTCTCCACCACCCTCTCCGCCGCTCCGGCCGCCGTACAGAACCCCGAACTCGTCGTTGAAGAAGTACACAGGAGCATAATCAACGCGACAAAGCGGAGGAATTTGGGATATCTTTCATGTGGAACGGGAAATCCGATCGACGATTGCTGGCGGTGCGATTCAAATTGGGAGAAGAATCGCCAGAGATTAGCCGACTGTGGAATCGGATTCGGCAAAAACGCCATCGGCGGCCGTGACGGTAAAATCTACGTCGTCACCGATTCCGGCGACGACGATCCCGTTAACCCAAAACCGGGAACTCTCCGGTACGCCGTAATCCAAGACGAACCCCTCTGGATCATCTTCGCTCGCGATATGGTAATCCGATTAAAAGAGGAACTAATCATGAACTCATTCAAAACCATCGACGGCCGTGGCGCCAGCGTCCACATCGCCGGCGGCCCCTGCATTACAATTCAATACGTAACGAACATCATAATCCATGGCTTGAACATTCACGATTGCAAGCAAGGAGGAAACACAGACGTGAGAGATTCCCCAAGACATTTTGGGTTCCGAACTATCTCCGACGGCGACGGCGTTTCAATCTTCGGCGGCAGCCATGTCTGGGTGGATCACTGCTCGTTGTCCAACTGTAATGATGGGTTGATCGATGCGATTCATGGGTCGACGGCGATTACGATTTCGAACAATTACATGACGCATCATGATAAAGTGATGTTGCTTGGACATAGTGATTCGTATACTCAAGATAAGAATATGCAGGTCACCATAGCTTTTAACCACTTCGGTGAAGGGCTTGTTCAACGAATGCCCAGATGCCGACATGGGTATTTTCACGTGGTGAACAATGACTACACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCGACCATTAACAGTCAAGGCAACAGATTTGTAGCTCCTAACGACAGATTCAGCAAAGAGGTGACAAAGTATGAGGATGCGCCCGAGAGTGAGTGGAAGCATTGGAATTGGAGGTCGGAAGGGGATATGATGGTGAACGGTGCGTTTTTCACGGCTTCCGGCGCCGGAGCGTCGTCGAGCTATGCTAGAGCGTCGAGCTTAGGGGCGAGGCCGTCGTCGCTGGTCGGGACAATTACGACCAATGCGGGTGCACTGAACTGCAGAAAGGGCTCCCGCTGCTGA 1233 51.74 MAPPTLFLSLISLFLLSSLSTTLSAAPAAVQNPELVVEEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDSNWEKNRQRLADCGIGFGKNAIGGRDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKHWNWRSEGDMMVNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1237313 1239311 - CmoCh18G001800.1 Cmo18g00180 401953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00180 410 PRINTS Pollen allergen Amb family signature 84 101 IPR018082 -
Cmo18g00180 410 PRINTS Pollen allergen Amb family signature 108 133 IPR018082 -
Cmo18g00180 410 PRINTS Pollen allergen Amb family signature 144 160 IPR018082 -
Cmo18g00180 410 PRINTS Pollen allergen Amb family signature 208 229 IPR018082 -
Cmo18g00180 410 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Cmo18g00180 410 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Cmo18g00180 410 PRINTS Pollen allergen Amb family signature 352 376 IPR018082 -
Cmo18g00180 410 PRINTS Pollen allergen Amb family signature 381 404 IPR018082 -
Cmo18g00180 410 PANTHER PECTATE LYASE 18-RELATED 25 407 IPR045032 GO:0030570
Cmo18g00180 410 PANTHER PECTATE LYASE 22-RELATED 25 407 - -
Cmo18g00180 410 SUPERFAMILY Pectin lyase-like 37 405 IPR011050 -
Cmo18g00180 410 Pfam Pectate lyase 146 327 IPR002022 -
Cmo18g00180 410 Gene3D - 61 403 IPR012334 -
Cmo18g00180 410 SMART amb_all 136 333 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00799 Cmo18g00180 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01742 Cmo-Chr2:9932597 Cmo18g00180 Cmo-Chr18:1237313 0 dispersed
Cmo06g01274 Cmo-Chr6:9615807 Cmo18g00180 Cmo-Chr18:1237313 0 dispersed
Cmo14g01918 Cmo-Chr14:14249841 Cmo18g00180 Cmo-Chr18:1237313 0 dispersed
Cmo17g00119 Cmo-Chr17:645851 Cmo18g00180 Cmo-Chr18:1237313 0 dispersed
Cmo18g00180 Cmo-Chr18:1237313 Cmo19g00155 Cmo-Chr19:944910 0 dispersed
Cmo04g02791 Cmo-Chr4:20087052 Cmo18g00180 Cmo-Chr18:1237313 0 transposed
Cmo05g00062 Cmo-Chr5:229530 Cmo18g00180 Cmo-Chr18:1237313 0 transposed
Cmo13g00799 Cmo-Chr13:7568287 Cmo18g00180 Cmo-Chr18:1237313 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00180 K01728 - csv:101209736 777.319