Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00184 ATGGAACCTTCTGAAGCTGTTTTCGTCCCTATTCACTGTGAATCATTGCCTTCTGGGTCTCAATCTCTACAGTTTCATGGCTCTGTTCATGATCCTGCACTATTTGATGCATCGCATGTGGCCGATGATGATCGCATCCATGCAGAGCTTCAGAAATTGGATTTGAAGGATGAGAAAGAGGCGGCGGTGAAGGATTTTGACGGCGGCGGAGAATGGGAAGTTGAGAAGAATCCTGTTGAAGGTGAAGGAAATTTGGAGGAGGAGGTGGTGGTGGTGGATGCAGGCGACGGCGGTGAGGTGGAGAAGGAAGGGGAAATGAGGGGTGGAAACAACCAGTACCCTGTACGGTCAGAGGCTGAGGATTGTGCCTTTTACCTTAGGACTGGCACTTGCAAGTTTGGATCATTGTGTAAATTCAATCATCCACTGCGAAAGAGACATCAGGTTGTTTCTGAGAAATTGAAGCACGAGAACGATTCGGCCGAGCAGACGAGCAAGACCGAATGCAAGTATTACTCGAGGACCGGGGGTTGTAAATTCGGAACAGCCTGTAGATATAACCACACGAGACCGAGAGCATTGCCAAACCCAATTCTCGAGCTTAACTTCCTTGGTTTGCCAATCCGACTAAACGAAAAAGAATGTCCCTATTACATGCGCACGGGATGCTGCAAATATGGAGCGAATTGCAAGTTTAATCATCCCGATCCTACTACCGTTGCTGTACCGGAATCGCTGTCGGGATATAACAATGGAGTGTTGCTACAAGGTGGTGCATCACAATCACAGATCACATCCTGGACTTCACCAAGAGTGCTGAATGAAACACCAACATTTGTACCTGCTATGATTTCACCTTCTCAAGATTCAGAATGGAACGCATACCAGGCTCCCATGTATCCATCAGAAATCAGCATGCTTCCACCCCCAACGTATGCCGTGAACAATATAGCATCGGGGACGGATCTTTATCCTTCTCATCAGCAAGTAGAAGAACATCCCGAACGACCTGGTCAACCCGAATGCAGCTACTTTCTAAAGACAGGGGATTGTAAATTTAAATCTCTTTGCATATATCACCACCCGAAAAATTGGAACCTGAAGTTACCGACCTGCACGCTCAATGACAAAGGCCTGCCTTTGAGACCTGATCAGAACGTATGCACGTATTACAGTCGCTACGGCATCTGTAAGTTCGGGCCGTCGTGCAAGTTCGATCATCCTATGCTTCCAGCTTCTTCAACGAGCGAGCTTAAACAGCAGCCTCACTACAGCAACTTTAATGCTGCAGAAGGGGCTGAAATGGGCGGAGGGAGTGGAAATGGCGTCACAGTTGAGCAGTCTGCATAA 1350 47.78 MEPSEAVFVPIHCESLPSGSQSLQFHGSVHDPALFDASHVADDDRIHAELQKLDLKDEKEAAVKDFDGGGEWEVEKNPVEGEGNLEEEVVVVDAGDGGEVEKEGEMRGGNNQYPVRSEAEDCAFYLRTGTCKFGSLCKFNHPLRKRHQVVSEKLKHENDSAEQTSKTECKYYSRTGGCKFGTACRYNHTRPRALPNPILELNFLGLPIRLNEKECPYYMRTGCCKYGANCKFNHPDPTTVAVPESLSGYNNGVLLQGGASQSQITSWTSPRVLNETPTFVPAMISPSQDSEWNAYQAPMYPSEISMLPPPTYAVNNIASGTDLYPSHQQVEEHPERPGQPECSYFLKTGDCKFKSLCIYHHPKNWNLKLPTCTLNDKGLPLRPDQNVCTYYSRYGICKFGPSCKFDHPMLPASSTSELKQQPHYSNFNAAEGAEMGGGSGNGVTVEQSA 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1268440 1272145 + CmoCh18G001840.1 Cmo18g00184 401957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00184 449 Gene3D - 90 158 - -
Cmo18g00184 449 ProSiteProfiles Zinc finger C3H1-type profile. 163 191 IPR000571 GO:0046872
Cmo18g00184 449 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 75 448 - -
Cmo18g00184 449 Gene3D - 325 409 - -
Cmo18g00184 449 MobiDBLite consensus disorder prediction 429 449 - -
Cmo18g00184 449 ProSiteProfiles Zinc finger C3H1-type profile. 382 410 IPR000571 GO:0046872
Cmo18g00184 449 SUPERFAMILY CCCH zinc finger 166 191 IPR036855 GO:0046872
Cmo18g00184 449 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 142 IPR000571 GO:0046872
Cmo18g00184 449 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 385 409 IPR000571 GO:0046872
Cmo18g00184 449 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 213 235 IPR000571 GO:0046872
Cmo18g00184 449 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 167 188 IPR000571 GO:0046872
Cmo18g00184 449 ProSiteProfiles Zinc finger C3H1-type profile. 336 364 IPR000571 GO:0046872
Cmo18g00184 449 SUPERFAMILY CCCH zinc finger 208 237 IPR036855 GO:0046872
Cmo18g00184 449 Gene3D - 159 245 - -
Cmo18g00184 449 Pfam RNA-binding, Nab2-type zinc finger 342 362 - -
Cmo18g00184 449 SUPERFAMILY CCCH zinc finger 116 146 IPR036855 GO:0046872
Cmo18g00184 449 PANTHER PROTEIN PHOSPHATASE RELATED 75 448 - -
Cmo18g00184 449 SMART c3hfinal6 211 236 IPR000571 GO:0046872
Cmo18g00184 449 SMART c3hfinal6 116 143 IPR000571 GO:0046872
Cmo18g00184 449 SMART c3hfinal6 164 190 IPR000571 GO:0046872
Cmo18g00184 449 SMART c3hfinal6 336 363 IPR000571 GO:0046872
Cmo18g00184 449 SMART c3hfinal6 382 409 IPR000571 GO:0046872
Cmo18g00184 449 ProSiteProfiles Zinc finger C3H1-type profile. 116 144 IPR000571 GO:0046872
Cmo18g00184 449 ProSiteProfiles Zinc finger C3H1-type profile. 209 237 IPR000571 GO:0046872
Cmo18g00184 449 SUPERFAMILY CCCH zinc finger 380 408 IPR036855 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00184 - - - cmo:103484086 728.013
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00808 Cmo18g00184 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00184 Cmo-Chr18:1268440 Cmo20g00257 Cmo-Chr20:1256481 2.45E-11 dispersed
Cmo18g00184 Cmo-Chr18:1268440 Cmo13g00808 Cmo-Chr13:7608227 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11480 PF00642 zf-CCCH 5.00E-09 CL0537 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00184 Cmo_Chr18 FPKM 1.14739 1.578912 2.929788 1.918264 2.096716 2.311762 1.867244 4.061979 4.083792 3.233782