Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00188 ATGAAAATCTGTGAAGCAATGGTGGCTTTAACATCCTACAGTGCTATCTTCATTCTCTTGTATGCTTTTGCTTCGGCTTCTCCGACTGCAAATGAGACGCATCCACGTCTCTTCAGTAAGATCTATGCCTTCGGAGATTCATTCACAGACACGGGCAACACAAGGTCTGTATCAGGGCCAACAGTATTCGGCCATGTCTCTAATTCTCCTTATGGCAGTACGTTCTTTCACCACTCGACCAACCGATATTCGGATGGGCGACTGGTGATTGACTTTATAGCCCAGACATTGTCCTTGCCTTTCTTGACACCGTACAGATATTTGAAGGGCAATGAGTCCTTTCATGGGGTGAACTTTGCTGTTGCAGGATCCACAGCTATAAACCATGATTTCTTTGTTAGAAACAACCTCAGCCTTAACATTACTCCTCAGTCTATCCAAACTCAGCTACATTGGTTCAACAAGTTCTTGGAGACTCAAGGACATAGAGGGGCAGCTGCTTTTGATGATGCTTTGTTTTGGGTTGGTGAAATTGGAGTCAACGATTATGCTTATAACACCGGATCGCCTATACCAGATGATACCATCCTTAAGCTCGGTGTTGCCAGCATTACTGGAGTTTTACAGTCTCTGCTGAAGAAGGGTGCAAAATACATGGTTGTTCAAGGTTTACCACCAAGTGGATGCCTGCCATTAGCAATGTCTATAGCCCCCGTCGTCGACAGAGACGATATCGGCTGCGTGAGGAGCTTAAACAACCAAACCTACTATCACAATCTTGCTCTCAGGGCCTCATTGCAATCTTTAAGGAGACAGTTTCCTCAAGCTGTCATCATATATGCTGATTACTGGAATGCGTATCGAACGGTCATGAAGAATCCCGGCAAGTACGGTTTCAGGGAGCTCTTCAGAGCCTGCTGCGGTGTCGGTGGACCGTACAACTTCAACGTGCTTGCTGTCTGTGGAATGTCTTCAGTAAGTTCCTGCAAAAAGCCATATGAATACATAAACTGGGATGGAGTTCACCTCACTGAAGCCATGTATAAAGTAGTTCATGACATGTTCGTCGAAGGTGGATTTACCGAGCCTCCTTTCGAGCCTTGTGATTCTGGGAATTCAGCATTCTCCACCAAAAGATCATTCAAAGGGCTGATCGATGCTTCAACTGAAAGCTTTCTGTTTGTTTATGAGGATGATCTTGATGGGCATCTCAGTAATAGCCCTTTGAAGTTGAAGCCACTTCAAAATCTTTTTCATCTTTGCATTTTTAGTAGATAG 1278 44.6 MKICEAMVALTSYSAIFILLYAFASASPTANETHPRLFSKIYAFGDSFTDTGNTRSVSGPTVFGHVSNSPYGSTFFHHSTNRYSDGRLVIDFIAQTLSLPFLTPYRYLKGNESFHGVNFAVAGSTAINHDFFVRNNLSLNITPQSIQTQLHWFNKFLETQGHRGAAAFDDALFWVGEIGVNDYAYNTGSPIPDDTILKLGVASITGVLQSLLKKGAKYMVVQGLPPSGCLPLAMSIAPVVDRDDIGCVRSLNNQTYYHNLALRASLQSLRRQFPQAVIIYADYWNAYRTVMKNPGKYGFRELFRACCGVGGPYNFNVLAVCGMSSVSSCKKPYEYINWDGVHLTEAMYKVVHDMFVEGGFTEPPFEPCDSGNSAFSTKRSFKGLIDASTESFLFVYEDDLDGHLSNSPLKLKPLQNLFHLCIFSR 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1279305 1282868 + CmoCh18G001880.1 Cmo18g00188 401961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00188 425 PANTHER LIPASE/HYDROLASE FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 9 366 - -
Cmo18g00188 425 CDD SGNH_plant_lipase_like 41 358 IPR035669 -
Cmo18g00188 425 SUPERFAMILY SGNH hydrolase 40 355 - -
Cmo18g00188 425 Pfam GDSL-like Lipase/Acylhydrolase 41 353 IPR001087 GO:0016788
Cmo18g00188 425 Gene3D SGNH hydrolase 29 358 IPR036514 -
Cmo18g00188 425 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 9 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00188 - - - csv:101211626 623.624
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00810 Cmo18g00188 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00188 Cmo-Chr18:1279305 Cmo05g01120 Cmo-Chr5:8921311 2.32E-69 dispersed
Cmo13g00810 Cmo-Chr13:7624044 Cmo18g00188 Cmo-Chr18:1279305 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g899 . . . . . . . . Cmo13g00810 Cmo18g00188 . . . . . Cpe20g00332 . . . . . . . . . . . . . . . Cone2ag0952 Cone16ag0048 . . . Csa01g00925 . Cme12g01625 . . . . . . . . Sed08g2463 . . Cma13g00778 Cma18g00212 . Car18g00204 Cpe09g00986 . Bhi08g01699 Tan05g2902 Cmetu12g0903 Lac10g0540 Hepe07g2160 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009369 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00188 Cmo_Chr18 FPKM 133.718063 140.463074 117.542641 116.950775 183.75795 215.422928 182.271484 157.537308 159.762741 150.956955