Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00189 ATGAGCAGCGAGGTAGAAGCCTGTCCAGAATGCACCAAAAGATGCTTACATCTTCATAGAAAGACAAATAGTTTATCATCTGTAACTTCGTTCTTCAAAGTTATGTTTGGCGATCGCTTCTCCGAAGTTTTGTACTTCCCACCCGTGTTTGCTTCTACAGTGTCGAGGTTGGTCAATAAAAAAGTTGTTCTTGAGGATTCTCTTGGGCAACAATGGAAGGTAACAGTTTCCAATTGTGAAGGATCTCTTGCGTTTCGAGAAGGGTGGAGTGTGTTTTCATCAGAGCATAGCTTAGAAATTGGGGATTTTTTGACCTTCAATCACATCATGGACTTGCACTTCAATGTTACTATCTACACGAAAACTGGTTGCGAAAAGGAGTTTGCTAACAAAAGCAATATGAGGAAAAGAACTAGAAGTAATTGTCCTGTACTTGAGACAACTAATGAAGGTTTGACCTATCCACAAGCTTCCTGCCCCTCTGTGGGTTCTGGATCCAATGTGGCACTGTCTCAAGATAAATGTTGCGTGACTTGTTATCGAGACTTGAATTTGAACCTGAACCAGGACAAAAGGCCAAAGTACCAGAGCAGTAATGAACGGAACGGATCTCTCTGTAAAGCAGACATTGTTGATTATTCGTACGCTTTCATCAACCAGAACAAGGACGTAGAACTGGAGGAAAACAGAAGTCCCTTATTCGACTTGTTTTCCATGGAAATGCAGACGACTAATTTCTGCGTTAATGAGATTACCACTAAGAAAGTTGCTGGGGATGAATTAAATCCTAACCGTGCTTCCACGTCATTAAACGCTGCAATTGATGTCAGCCGAATTAACAATGCTCGAGTTGATATAAAAGGAGATAAAAGTCAGTGTTTTGAGGCGGCTGACATAAAGAGGAGTGTCTCTGATAACAATCCTTGCCACGATAAGACTATCGAGGTTCCTTTTATTACGTCTGCAACTAATTCTGATAGAAATGTGGAGCGTTTTTGTGACATGCCATTAAAAAGTGTAAAAGACTGCCAGAATATACCAGCAGTATGCGACACGCCATCAACAATTACAAGACATGATCATCAGGAGTCTAATAATAAACATACTTTTCCCGTCGACCATTCCCATGGCATGAAACTCGAGTATCCTCCAATTTCCCTGGAGGTTAAAAAGTGTCCGCACGGGGACGTTAAAAAGACCACTAAAACAGACATGAACAACTATGAAGACTTCATTGGACAAATATCGGTGTCTAAAGTGAAGGAGGAGCTCCTCGAAAAGTCTAACCAAAGTGGTAGTGATGGTAATGACAGTAATGCAGATTCGATAGCAACTCGAGCCCACGTCTCCTGCATAGTGGCTAAAGATACTCTATCTTTTCTGGAGCTACCGACGAGTTTGCAGTCCCCGTGTTCGAGAGCCCGAAAAAATCCAGAGAAGAGAAGGTTAGTGTTTCTTCGGGATCCGAGGAAGAGACTGTGGCCGATTCTTTACCACGAGATGCCTAATGTTCATGTTCTAACAAGTGGGTGGGAAGCTTTTTGTTCTGCAAATAAAATTCAATCAGGGGACGAGTGTTTATTTCACGTCGAGGACGAGCTTGAACGCATATATGAAGTACGCGTTCGGAAATGTAAAAATTAG 1644 41.97 MSSEVEACPECTKRCLHLHRKTNSLSSVTSFFKVMFGDRFSEVLYFPPVFASTVSRLVNKKVVLEDSLGQQWKVTVSNCEGSLAFREGWSVFSSEHSLEIGDFLTFNHIMDLHFNVTIYTKTGCEKEFANKSNMRKRTRSNCPVLETTNEGLTYPQASCPSVGSGSNVALSQDKCCVTCYRDLNLNLNQDKRPKYQSSNERNGSLCKADIVDYSYAFINQNKDVELEENRSPLFDLFSMEMQTTNFCVNEITTKKVAGDELNPNRASTSLNAAIDVSRINNARVDIKGDKSQCFEAADIKRSVSDNNPCHDKTIEVPFITSATNSDRNVERFCDMPLKSVKDCQNIPAVCDTPSTITRHDHQESNNKHTFPVDHSHGMKLEYPPISLEVKKCPHGDVKKTTKTDMNNYEDFIGQISVSKVKEELLEKSNQSGSDGNDSNADSIATRAHVSCIVAKDTLSFLELPTSLQSPCSRARKNPEKRRLVFLRDPRKRLWPILYHEMPNVHVLTSGWEAFCSANKIQSGDECLFHVEDELERIYEVRVRKCKN 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1282878 1286158 + CmoCh18G001890.1 Cmo18g00189 401962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00189 547 MobiDBLite consensus disorder prediction 355 377 - -
Cmo18g00189 547 Gene3D - 428 546 IPR015300 -
Cmo18g00189 547 CDD B3_DNA 30 119 IPR003340 GO:0003677
Cmo18g00189 547 Pfam B3 DNA binding domain 31 119 IPR003340 GO:0003677
Cmo18g00189 547 Pfam B3 DNA binding domain 474 536 IPR003340 GO:0003677
Cmo18g00189 547 SUPERFAMILY DNA-binding pseudobarrel domain 477 534 IPR015300 -
Cmo18g00189 547 MobiDBLite consensus disorder prediction 356 375 - -
Cmo18g00189 547 ProSiteProfiles B3 DNA-binding domain profile. 29 122 IPR003340 GO:0003677
Cmo18g00189 547 SMART B3_2 448 546 IPR003340 GO:0003677
Cmo18g00189 547 SMART B3_2 31 122 IPR003340 GO:0003677
Cmo18g00189 547 ProSiteProfiles B3 DNA-binding domain profile. 446 544 IPR003340 GO:0003677
Cmo18g00189 547 SUPERFAMILY DNA-binding pseudobarrel domain 27 124 IPR015300 -
Cmo18g00189 547 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 542 IPR044837 -
Cmo18g00189 547 CDD B3_DNA 457 544 IPR003340 GO:0003677
Cmo18g00189 547 Gene3D - 24 124 IPR015300 -
Cmo18g00189 547 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS02G0598200-LIKE 5 542 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00189 - - - cmo:103484129 709.523
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00811 Cmo18g00189 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00189 Cmo-Chr18:1282878 Cmo09g00192 Cmo-Chr9:863015 1.20E-11 dispersed
Cmo13g00811 Cmo-Chr13:7626643 Cmo18g00189 Cmo-Chr18:1282878 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g901 . . . . . . . . Cmo13g00811 Cmo18g00189 . . . . . Cpe20g00331 . . . . . . . . . . . . . . . . Cone16ag0046 . . Lsi02g00470 Csa01g00928 Chy12g01199 Cme12g01623 . . . . . . . . . . . Cma13g00779 . Car13g00627 Car18g00205 Cpe09g00985 . Bhi08g01703 Tan05g2910 . . . . . Cla03g00327 Cam03g0344 Cec03g0335 Cco03g0348 Clacu03g0345 Cmu03g0951 Cre03g0643 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005615 0 3 0 1 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 6 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11481 PF02362 B3 8.10E-11 CL0405 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00189 Cmo_Chr18 FPKM 21.498924 21.435575 33.756088 36.590069 20.969408 19.215158 19.560455 39.132561 41.199322 40.606281