Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00200 ATGGCGGATCGAGATCGGAAGCTCAAAGCGGCGGCACATTCTGTTGATCCTCGGAGTGGTTTCTGTCCTCAAACCAAGATTTTCCATAGCCTCCGGCCACCACTCTCGCTTCCGCCGATATCTCAGCCTCTCACTGTTGTCGGACACGCACTTTCTATTCTTCGATCATCCCCTCCTCCGGTGAACACTACCGCTCTTGTTGATTTCGACTCAGGTGACAGTATCTCCTACGGTATTTTCCTCTGCCAAATCCGAAACCTCGCCTTTAATCTTAGAACTGTTTTCTCCCTCTCCAAGGGTCAGGTTGCTTTTATTCTTTCGCCGACTTCTCTCCGAGTTCCTGTGTTGTATTTTGCTCTGTTATCTCTCGGTGTTGTTGTCTCTCCGGCTAATCCAATCGGTTCTGAATCGGAGATTGCTTACCAGGTTCGACTCTGTAAACCGGACATTGCCTTCGTTACTTCCTCAACGGCGTCCAAGCTTTCGAGGGTTCCAGTTTCCACTGTCTTGATTGATTCAATGCAGTTTCTATCTATGATGAATGAAAGCAATCTATCGAATGGAGTGGATGATGATGCTGTTGATGTCAAAGTCGATCAAAACGACTCGGCGGCAATTCTGTACTCGTCAGGGACTACCGGGCGAGTGAAAGGAGTCTTACTGTCTCACAGGAACCTCATAGCGGCGATCTCTAGTTTTATGACATTAGAGGCGACGGCCGACGAAAGAGAAACGGAGCCGCATCCCGTTTCTCTGTACCTGTTACCTATGTTCCATGTTTTCGGATTCTATATGATGATTCGATCGATTTCAGAAGGCCATACGCTGGTTCTGATGCGAAAGTTCGGTTTCGAGGAAATGTTAAGAGCCGTGGAGAAGCATAGGGTTACATACATCCCAGTTTCTCCCCCGCTGGTGGTGGCGATGGTCAAGTCGGAGCTGGTGGCGAAGTACGATCTCAGCTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCTCTTGGTAAAGAAGTCGTCGATAAATTCCACGTTAAATTCCCCAACGTAGAAATTATACAGGGATATGGCTTGACAGAGAGTTCAGCAGCGGCGGCGCGGACTTTGGGGCCTGAAGAATGCAGTAATACAAGTTCAGTAGGTCGCTTATCTGAAAGTCTGGAAGCCAAAATAGTGGATCCTGCAACTGGAGAAGCCTTACCTCCTGGTCACAAAGGAGAGCTTTGGCTGCGAGGTCCAGGAATCATGAAAGGTTATGTTGGAGATGAAAAGGCAACTGCTGAAACTTTGCATCCGGAGGGATGGCTAAAAACTGGTGACCTTTGCTATTTTGATTCTGATGGATATCTCTATATTGTCGATAGATTAAAAGAATTGATCAAGTACAAGGCCTATCAGGTCCCACCAGCTGAACTCGAACATTTACTTCAATCCAACCCCGAGATCGCCGATGCTGCTGTCATACCCTACCCTGATGAAGAAGCTGGAGAGATTCCTATGGCTTATATTGTTAGAAAGCCTGGAAGCACTCTCACTGAAGCTCAAGTCATAGATTTCATTGCAAAACAGGTTGCACCGTACAAGAAAATCCGGAGGGTGTCTTTTGTGAACACGATCCCAAAATCGCCTGCTGGGAAGATTCTTAGGAGGGAGCTTATCAAACATGCGCTCTCTCGTGGTTCTAGCAAGTTATAA 1689 47.48 MADRDRKLKAAAHSVDPRSGFCPQTKIFHSLRPPLSLPPISQPLTVVGHALSILRSSPPPVNTTALVDFDSGDSISYGIFLCQIRNLAFNLRTVFSLSKGQVAFILSPTSLRVPVLYFALLSLGVVVSPANPIGSESEIAYQVRLCKPDIAFVTSSTASKLSRVPVSTVLIDSMQFLSMMNESNLSNGVDDDAVDVKVDQNDSAAILYSSGTTGRVKGVLLSHRNLIAAISSFMTLEATADERETEPHPVSLYLLPMFHVFGFYMMIRSISEGHTLVLMRKFGFEEMLRAVEKHRVTYIPVSPPLVVAMVKSELVAKYDLSSLQILGCGGAPLGKEVVDKFHVKFPNVEIIQGYGLTESSAAAARTLGPEECSNTSSVGRLSESLEAKIVDPATGEALPPGHKGELWLRGPGIMKGYVGDEKATAETLHPEGWLKTGDLCYFDSDGYLYIVDRLKELIKYKAYQVPPAELEHLLQSNPEIADAAVIPYPDEEAGEIPMAYIVRKPGSTLTEAQVIDFIAKQVAPYKKIRRVSFVNTIPKSPAGKILRRELIKHALSRGSSKL 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1339080 1343170 - CmoCh18G002000.1 Cmo18g00200 401973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00200 562 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 30 551 - -
Cmo18g00200 562 ProSitePatterns Putative AMP-binding domain signature. 206 217 IPR020845 -
Cmo18g00200 562 CDD 4CL 38 550 - -
Cmo18g00200 562 Pfam AMP-binding enzyme 62 460 IPR000873 -
Cmo18g00200 562 Gene3D - 456 556 IPR045851 -
Cmo18g00200 562 SUPERFAMILY Acetyl-CoA synthetase-like 62 556 - -
Cmo18g00200 562 Pfam AMP-binding enzyme C-terminal domain 469 544 IPR025110 -
Cmo18g00200 562 Gene3D - 41 455 IPR042099 -
Cmo18g00200 562 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 30 551 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00825 Cmo18g00200 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02061 Cmo-Chr1:14389013 Cmo18g00200 Cmo-Chr18:1339080 3.04E-157 dispersed
Cmo09g00069 Cmo-Chr9:306661 Cmo18g00200 Cmo-Chr18:1339080 1.63E-172 dispersed
Cmo13g00825 Cmo-Chr13:7690457 Cmo18g00200 Cmo-Chr18:1339080 0 dispersed
Cmo18g00200 Cmo-Chr18:1339080 Cmo19g00221 Cmo-Chr19:1483825 1.04E-134 dispersed
Cmo20g00062 Cmo-Chr20:344468 Cmo18g00200 Cmo-Chr18:1339080 4.86E-19 transposed
Cmo13g00824 Cmo-Chr13:7689442 Cmo18g00200 Cmo-Chr18:1339080 1.11E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00200 K01904 - csv:101211791 893.649