Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00211 ATGGCGGTCGCACTCCATGATGTCAAATCGGCAGCCGGTTTGAAAAAACTTGATGAGTACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCAAAGGATGACGTTACCGTTTACGAGAGTCTCTCCAAACCCGTATCCAGCGAATATCTTAACGTGGCTAGGTGGAGCAATCACATCGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGAGAGGGTTCTGGCGTTAAGTTCGAATCAGCTGAGGCAATTGCAACACCACCGGCCGGGGATGCAAAGGCTGCTGACGACGATGACGACGATATGGATCTTTTTGGTGAAGAAACTGAGGAGGAAAAGAAGGCTGCTGAGGAGCGTGCAGCGTCAATCAAGGCTTCTACTAAGAAGAAGGAATCTGGCAAGTCATCAGTTCTGATGGATATCAAACCATGGGATGATGAGACTGACATGAAGAAACTTGAAGAGGCCGTAAGAAGTGTTGAGATGGAAGGTTTGCTCTGGGGAGCATCCAAGCTTGTTCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTGGATGACTTGGTGTCTGTTGACAATTTGATTGAGGAACGTCTGACAGTTGAACCCATAAACGAGCATGTCCAGAGCTGTGATATTGTGGCCTTCAACAAAATATGTATAATTTTGAGCTTTGGTGGTTTCAAAGATGTTGCCGAGTCCAGGGAAGATCTTTTTTATTATTTGTTTACAATCTCATGTGTCTGTTTCTCGTTTCTACCTCTTCAAACTTGTTGTCTACTTGCTTCTACGAATTTTGAAGCGAGCTTCTTGAAATTGTCTTTGAGTTATCATGTTTCATGA 858 43.82 MAVALHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYESLSKPVSSEYLNVARWSNHIEALLRVSAVFGEGSGVKFESAEAIATPPAGDAKAADDDDDDMDLFGEETEEEKKAAEERAASIKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVEMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEERLTVEPINEHVQSCDIVAFNKICIILSFGGFKDVAESREDLFYYLFTISCVCFSFLPLQTCCLLASTNFEASFLKLSLSYHVS 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1388069 1389622 - CmoCh18G002110.1 Cmo18g00211 401984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00211 285 PANTHER ELONGATION FACTOR 1-DELTA 1-RELATED 1 227 - -
Cmo18g00211 285 Gene3D - 128 224 IPR014717 -
Cmo18g00211 285 SMART EF1_GNE_2 135 224 IPR014038 GO:0003746|GO:0006414
Cmo18g00211 285 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 227 - -
Cmo18g00211 285 SUPERFAMILY GST C-terminal domain-like 9 69 IPR036282 -
Cmo18g00211 285 Pfam EF-1 guanine nucleotide exchange domain 137 224 IPR014038 GO:0003746|GO:0006414
Cmo18g00211 285 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 99 107 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cmo18g00211 285 SUPERFAMILY eEF-1beta-like 132 224 IPR036219 -
Cmo18g00211 285 CDD EF1B 133 224 IPR014038 GO:0003746|GO:0006414
Cmo18g00211 285 Gene3D - 3 75 - -
Cmo18g00211 285 Coils Coil 107 127 - -
Cmo18g00211 285 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 213 224 IPR001326 GO:0003746|GO:0005853|GO:0006414
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00833 Cmo-Chr13:7745294 Cmo18g00211 Cmo-Chr18:1388069 4.33E-122 dispersed
Cmo18g00211 Cmo-Chr18:1388069 Cmo18g00213 Cmo-Chr18:1389641 6.77E-147 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00211 K03232 - csv:101215827 357.836