Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00213 ATGGTTTCAACGAGAAGAAGTGGATCTCTCTCTGGTAGCAATAGCAAGAGATCTTCGTCGTCGGAGGAGAAGCCATCGTCGCCGAAGCGTCAAAAGGTGGAAAATGGGTGTGGTTCAGAGAAATCGATGCCAGCGGCGGAGAATTCTAAGGAATTGTGTACCCCGCCGACTGTGGATCCTGGAGATCATGGACCTGGCGGTGGTCCGATCGTCGGAGTTGATGCTGGAGAAGGTGTGAGCTCTTTGAAGGAGGATGCTGCACCAGCGGCTGTCGCTGTTACCACTCCTATCGCAGAGGGAACTTCACTGGTAGGGGATAGGCCTAGGACTTCTTTTTCATCTTGGAGTCACTATGCTTCGAAGCAGAATACAAGTTTTGAGACGACGACTCCTTGGTGTAGGCTTCTCTCAGAGTTCGGTCAGAACTCCAATGTTGATATTTTCTCGTCACATTTTACCATTGGTTCTAGTAGAGGTTGCAATTTTCCTTTGAAGGATCACACAATTAGTGGGACACTTTGCAAGATCAAGCACACTCAGCGTGAGGGTAGTACTGTAGCTGTGCTTGAAAGTACGGGAGGCAAGGGATCAGTGATGGTTAATGGGTTGGCAGTCAAGAGGAACACCAGCTGTGTGCTTAATTCTGGTGACGAGGTGGTCTTCGGTGCTTTGGGGAACCATGCTTATATATTTCAGCAACTTATGAATGATGTTTCAGTTAAAGGTTTAGAGGTTCAGAGTGGTGTTGGAAAATTCTTGCAGCTCGGAAAGAGGACTGGCGATCCTTCTGCTGTGGCTGGGGCCTCGATTTTGGCTTCTCTTTCAAGCCTCAGAGAGGATATATCACGTTGGAAACCTCCTTCTCAGACCAGCAGTAAAACACACCAAGGTGCTGAACTACCTTCTAATTCTGTTGTTCATGATGCAATGGAACTTGACATTGATGCTCTTGAAGCCAACTCAAATCCAGAAGTACGAAATGATAAAGCTGTAGACTCAAGCACAACTAACAGGAATCTTCATCCCGGCTCCAATCCAGACGCTGTCATAGAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTGATAGGGCCTTTGTTCAGGATGTTAGCTCAGTCAACTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTAATGGAAGAAAGAAACCAGTGGATTGGGGAGTTGCAGCCAGCATCAACCTCGGGAATGTCTTTGCGGTGTGCAGCATTTAAAGAAGACGTTCATGCGGGGATTGTTGATGGAAGGGACTTAGAGGTTTCATTTGAGAACTTTCCATATTATTTGAGTGAGAATACGAAGAATGTGCTTATTTCCGCTTCTTTCATACACTTGAAGCATAAAGAACATTCGAAGTATACATCAGAATTAAATACGGTGAATCCACGAATTCTACTTTCTGGTCCTGCTGGTTCAGAGATATATCAAGAGATGCTAGCAAAGGCTCTTGCCAACTATTATGGGGCCAAGCTACTCATTTTTGATAGCCACTCATTTTTGGGTGGTTTATCATCAAAGGAAGCAGAGCTGCCGAAGGATGGAATTAATGCAGCAAAATCTTGTAATTGTTCTAAACAGAGTATTGTATCTACTGAGATTACCAAGAACACAGATCAAATGGCTGGTGATGAAGATACACCGAGCTCTTCAAATGCTACCTTGTTTGCCCCTGATTCTCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCGGGGACAGCAAAGAACAATTTTTTAAAAATTGGTGATAGAGTAAGATTTATTGGTTCAGCTTCTGGTGGGATATATCCAACAACGTCTCCCTCAAGGGGCCCACCCAATGGAACTCGTGGAAAGGTTGTATTAACTTTTGACAACAATACTTCGTCAAAAATTGGTGTTAAGTTTGATAAACTTATACCTGATGGAGTTGATCTTGGTGGATATTGTGAAGGAGGCTATGGATATTTCTGTTATGCTACCGATCTTCGTTTGGAGAACTCTGGCGTGGAAGAATTGGACAAGATACTTATTGATATTTTATTTGAGGCGGTGTTTAGTGAAAGCAGAAATTCTCCTTTCATTTTGTTCATGAAAGATGCGGAGAAGTCTCTTGTTGGTAATATAGATTCATATTCTACTTTTAAAAGTAGACTTGAAAAGCTTCCTGACAATGTTATTGTAATTGGCTCTCATACTCATACTGACAACCGCAAGGAGAAGTCGCATCCTGGTGGCCTGCTTTTCACAAAATTTGGCAGCAATCAAACTGCCCTTCTTGACTTGGCATTTCCGGATAGTTTTGGAAGACTGCATGACCGAGGGAAAGAAGTCCCAAAAGCAACAAAACTTCTTACAAAATTATTTCCCAATAAAGTTACTATCCACATGCCGCAGGATGAGGGCCTTCTTGTATCATGGAAGCACCAGCTAGAACGAGATGCCGAAACTCTCAAAATGAAAGGAAACCTTAATCAATTGCGTGTTGTTTTGAGTAGGAGTGGAATGGATTGTGAAGGTCTAGAGACATTATGCATCAAGGATCAAACACTTACAAATGAGAGTGCGGAGAAGGTAGTTGGATGGGCCTTAAGCCATCATTTAATGCAGAATCTAGAAGCCGATCCTGATTCTAGAGTTCTTTTGTCTAGTGAGAGCATTCAATACGGGATTGGCATCTTACAGGCTATCCAGAATGAAACTAAGTCCTTGAAGAAGTCACTTAAGGATGTTGTTACGGAGAATGAATTTGAGAAAAGGCTTTTAGCAGACGTTATCCCACCCAGTGATATAGGAGTCACATTTGATGATATTGGAGCTCTTGAAAATGTGAAGGATACTCTAAAGGAGTTGGTGATGCTTCCTTTACAAAGACCCGAACTTTTCTGCAAGGGGCAGTTGACTAAGGTTCTAATGCCACCCAGAAGTCTGGCTGGAGGAAAATGTAAGACGATGCTCGCAAAAGCTGTGGCTACTGAAGCTGGTGCAAATTTTATCAACATTTCCATGTCAAGCATTACGTCGAAGTGGTTTGGTGAGGGTGAGAAGTATGTGAAAGCTGTTTTCTCTCTAGCCAGTAAAATTGCCCCAAGTGTTGTATTTGTTGATGAAGTTGACAGCATGTTGGGTCGAAGAGAAAATCCAGGAGAACATGAGGCCATGCGAAAGATGAAAAATGAATTTATGGTGAACTGGGATGGTTTGCGAACAAAAGACAAAGAAAGGGTGCTGGTTCTTGCAGCCACAAACAGACCTTTTGACCTTGATGAAGCTGTTATTCGAAGGCTTCCTCGTAGGTTGATGGTGAATTTGCCAGATGCTCCCAACAGAGCAAAGATACTCAAAGTTATTTTGGCGAAAGAAGATTTGTCTCAGGACTTCGATTTTGATTCGGTTGCTAGTATGACAGATGGATATTCTGGGAGTGACCTTAAGGAGCATGCTGCAGCTCTCGCAGATGGCAGACCTGCTCCAGCTCTGAGTGGAAGTGAGGATATTCGACCTCTAAATATGGACGACTTCAAATACGCTCATGAACGGGTATGCGCAAGCGTTTCGTCCGAGTCCGTAAACATGACCGAGCTGTTACAATGGAACGAGCTCTACGGTGAAGGGGATGCCAGTGCTCACTCGAATCAAATTTATCATGGAAGCCATTTTCTCTGGAATTTTGCTGATCTTAGTTTTGGTCATCGACAACTTGTGTTTTGTGCCATCAGTAAAAATAGATCAGAAGTTGCATCGGGCAGAGAGGTCTTGGAATTGTTGCTCGTTTCATGTCGTGTTGAAGAGCCGAAAACCCTAGACGCCACTAACAGGCTTCAGCAATTATCAGCATCCAGTCTCGTCTTCTCATTTTTGAGTTGCAGCTTCCCTGCCGGCGAGAAATCTCATTATTTTGAAATGGCCGTCGCACTCCATGATGTCAAATCGGCAGCCGGTTTGAAAAAGCTTGATGAGTACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCAAAGGATGACGTTACCGTTTACGAGAGTCTCTCCAAACCCGTATCCAGCGAATATCTTAACGTGGCTAGGTGGAGCAATCACATCGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGAGAGGGTTCTGGCGTTAAGTTCGAATCAGCTGAGGCAATTGCAACCCCACCGGGCGCGGACGCAAAGGCTGCTGATGACGATGACGACGATATGGATCTTTTTGGTGAAGAGACTGAGGAGGAAAAGAAGGCTGCTGAGGAGCGTGCAGCTTCCATCAAGGCTTCTACTAAGAAGAAGGAATCTGGCAAGTCATCAGTTCTGATGGATATCAAACCATGGGATGATGAGACTGACATGAAGAAACTTGAAGAGGCCGTAAGAAGCGTTGAGATGGAAGGTTTGCTCTGGGGAGCATCCAAGCTTGTTCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTGGATGACTTGGTGTCTGTTGACAATTTGATTGAGGAACGTCTGACAGTTGAACCCATAAACGAGCATGTCCAGAGCTGTGATATTGTGGCCTTCAACAAAATATAG 4593 43.91 MVSTRRSGSLSGSNSKRSSSSEEKPSSPKRQKVENGCGSEKSMPAAENSKELCTPPTVDPGDHGPGGGPIVGVDAGEGVSSLKEDAAPAAVAVTTPIAEGTSLVGDRPRTSFSSWSHYASKQNTSFETTTPWCRLLSEFGQNSNVDIFSSHFTIGSSRGCNFPLKDHTISGTLCKIKHTQREGSTVAVLESTGGKGSVMVNGLAVKRNTSCVLNSGDEVVFGALGNHAYIFQQLMNDVSVKGLEVQSGVGKFLQLGKRTGDPSAVAGASILASLSSLREDISRWKPPSQTSSKTHQGAELPSNSVVHDAMELDIDALEANSNPEVRNDKAVDSSTTNRNLHPGSNPDAVIEAGNVKLSGVNDLIGPLFRMLAQSTSCKLKLSKSICKQVMEERNQWIGELQPASTSGMSLRCAAFKEDVHAGIVDGRDLEVSFENFPYYLSENTKNVLISASFIHLKHKEHSKYTSELNTVNPRILLSGPAGSEIYQEMLAKALANYYGAKLLIFDSHSFLGGLSSKEAELPKDGINAAKSCNCSKQSIVSTEITKNTDQMAGDEDTPSSSNATLFAPDSQPKMEMDSIPSSSGTAKNNFLKIGDRVRFIGSASGGIYPTTSPSRGPPNGTRGKVVLTFDNNTSSKIGVKFDKLIPDGVDLGGYCEGGYGYFCYATDLRLENSGVEELDKILIDILFEAVFSESRNSPFILFMKDAEKSLVGNIDSYSTFKSRLEKLPDNVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKATKLLTKLFPNKVTIHMPQDEGLLVSWKHQLERDAETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRVLLSSESIQYGIGILQAIQNETKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKVLMPPRSLAGGKCKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSQDFDFDSVASMTDGYSGSDLKEHAAALADGRPAPALSGSEDIRPLNMDDFKYAHERVCASVSSESVNMTELLQWNELYGEGDASAHSNQIYHGSHFLWNFADLSFGHRQLVFCAISKNRSEVASGREVLELLLVSCRVEEPKTLDATNRLQQLSASSLVFSFLSCSFPAGEKSHYFEMAVALHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYESLSKPVSSEYLNVARWSNHIEALLRVSAVFGEGSGVKFESAEAIATPPGADAKAADDDDDDMDLFGEETEEEKKAAEERAASIKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVEMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEERLTVEPINEHVQSCDIVAFNKI 1530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1389641 1407791 - CmoCh18G002130.1 Cmo18g00213 401986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00213 1530 MobiDBLite consensus disorder prediction 282 301 - -
Cmo18g00213 1530 Gene3D - 1110 1184 - -
Cmo18g00213 1530 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 1519 1530 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cmo18g00213 1530 SUPERFAMILY GST C-terminal domain-like 1310 1375 IPR036282 -
Cmo18g00213 1530 Coils Coil 1413 1433 - -
Cmo18g00213 1530 ProSitePatterns AAA-protein family signature. 1081 1100 IPR003960 GO:0005524|GO:0016887
Cmo18g00213 1530 Coils Coil 899 919 - -
Cmo18g00213 1530 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 1405 1413 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cmo18g00213 1530 CDD FHA 149 232 IPR000253 GO:0005515
Cmo18g00213 1530 CDD EF1B 1439 1530 IPR014038 GO:0003746|GO:0006414
Cmo18g00213 1530 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 77 362 - -
Cmo18g00213 1530 SMART EF1_GNE_2 1441 1530 IPR014038 GO:0003746|GO:0006414
Cmo18g00213 1530 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 387 1213 - -
Cmo18g00213 1530 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 77 362 - -
Cmo18g00213 1530 MobiDBLite consensus disorder prediction 1 21 - -
Cmo18g00213 1530 Pfam FHA domain 153 222 IPR000253 GO:0005515
Cmo18g00213 1530 MobiDBLite consensus disorder prediction 326 343 - -
Cmo18g00213 1530 SUPERFAMILY eEF-1beta-like 1438 1530 IPR036219 -
Cmo18g00213 1530 MobiDBLite consensus disorder prediction 1 76 - -
Cmo18g00213 1530 MobiDBLite consensus disorder prediction 317 346 - -
Cmo18g00213 1530 Pfam EF-1 guanine nucleotide exchange domain 1443 1530 IPR014038 GO:0003746|GO:0006414
Cmo18g00213 1530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 938 1197 IPR027417 -
Cmo18g00213 1530 SMART AAA_5 983 1111 IPR003593 -
Cmo18g00213 1530 Gene3D - 1434 1530 IPR014717 -
Cmo18g00213 1530 Pfam ATPase family associated with various cellular activities (AAA) 987 1107 IPR003959 GO:0005524|GO:0016887
Cmo18g00213 1530 MobiDBLite consensus disorder prediction 549 583 - -
Cmo18g00213 1530 MobiDBLite consensus disorder prediction 549 568 - -
Cmo18g00213 1530 MobiDBLite consensus disorder prediction 282 303 - -
Cmo18g00213 1530 Gene3D - 937 1197 IPR027417 -
Cmo18g00213 1530 CDD AAA 988 1109 - -
Cmo18g00213 1530 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 387 1213 - -
Cmo18g00213 1530 Gene3D - 1279 1381 - -
Cmo18g00213 1530 Gene3D - 131 240 - -
Cmo18g00213 1530 MobiDBLite consensus disorder prediction 22 36 - -
Cmo18g00213 1530 SUPERFAMILY SMAD/FHA domain 131 229 IPR008984 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00833 Cmo18g00213 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g01074 Cmo-Chr17:8925776 Cmo18g00213 Cmo-Chr18:1389641 0 dispersed
Cmo18g00213 Cmo-Chr18:1389641 Cmo04g00759 Cmo-Chr4:3789816 3.80E-23 dispersed
Cmo18g00211 Cmo-Chr18:1388069 Cmo18g00213 Cmo-Chr18:1389641 6.77E-147 proximal
Cmo13g00833 Cmo-Chr13:7745294 Cmo18g00213 Cmo-Chr18:1389641 5.78E-112 transposed
Cmo13g00832 Cmo-Chr13:7722307 Cmo18g00213 Cmo-Chr18:1389641 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00213 - - csv:101214766 2136.3