Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00216 ATGCCGAAGAGAACGACGCATACATACTCCAGCGAAGACGCCGCACCAGATGGACCAGACTCTGATCTCTTCGTTTACTATTGCAAGCACTGTGGATCGCACGTCTTAATCACTGATACTCAATTGCAGAAAATGCCAAAAAGGAAGACGGACAAGGCTTTTGCGTTGGACAAGAAGAAGCATCTTGCAAGGTTAAATATCAATGAGGCGGGAAAAGTTCTACTAAAAAGGGGTGAAGGGAAACTTGAAAGGCAATTCCGTATGAACTGTATAGGTTGTGGACTCTTCGTGTGCTATCGCTCCGAGGAAGAATTGGAATTTGCTTCTTTCATTTATGTTGTTGATGGTGCACTTAGTACAGTTGCTGCTGAAACCAATCCACAGGATGCTCCCGTGCCTCCCTGTATATCTCAACTTGAAGGAGGACTGGTCCAAGTGGCCATAGAAGTTGAAGATCGAGCACAGCGCTCAGCAATTACAAGAGTAAATGCTGATGATGTACGTGTTGCTGTTGCTGCACCTCAAGCGCGTGGAGAAGCCAACAATGAGCTTTTGGAGTTCATGGGAAAAGTATTGGGACTGAGGCTTAGCCAAATGACTCTTCAACGAGGATGGAATAACAAATCAAAGCTTCTTGTGGTTGAGGATTTGTCAGCTAGGCAGGTGTATGAAAAACTTCTGGAGGCAGTGCAGCCTTGA 699 45.64 MPKRTTHTYSSEDAAPDGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAFALDKKKHLARLNINEAGKVLLKRGEGKLERQFRMNCIGCGLFVCYRSEEELEFASFIYVVDGALSTVAAETNPQDAPVPPCISQLEGGLVQVAIEVEDRAQRSAITRVNADDVRVAVAAPQARGEANNELLEFMGKVLGLRLSQMTLQRGWNNKSKLLVVEDLSARQVYEKLLEAVQP 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1409223 1413533 + CmoCh18G002160.1 Cmo18g00216 401989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00216 232 Pfam Uncharacterised ACR, YggU family COG1872 144 215 IPR003746 -
Cmo18g00216 232 PANTHER OS07G0295200 PROTEIN 1 232 - -
Cmo18g00216 232 Hamap UPF0235 protein YggU [yggU]. 140 228 IPR003746 -
Cmo18g00216 232 SUPERFAMILY YggU-like 133 220 IPR036591 -
Cmo18g00216 232 Gene3D - 133 231 IPR036591 -
Cmo18g00216 232 SMART DUF167_2 140 216 IPR003746 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00216 - - - csv:101215962 451.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00834 Cmo18g00216 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g01078 Cmo-Chr20:10211910 Cmo18g00216 Cmo-Chr18:1409223 2.17E-12 transposed
Cmo13g00834 Cmo-Chr13:7747948 Cmo18g00216 Cmo-Chr18:1409223 4.27E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g124 . . . . . . . . Cmo13g00834 Cmo18g00216 . . . . . Cpe20g00309 . . . . . . . . . . . . . . . . . . . Lsi02g00500 Csa01g00961 Chy12g01172 Cme12g01594 . . . Bda14g01367 . Bpe15g00215 Bma03g01257 . Sed01g1566 . . Cma13g00802 Cma18g00321 Car13g00650 Car18g00226 Cpe09g00964 . Bhi08g01483 Tan05g2958 . . Hepe07g2103 . . Cla03g00351 Cam03g0368 Cec03g0356 Cco03g0371 Clacu03g0368 Cmu03g0974 Cre03g0666 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006353 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00216 Cmo_Chr18 FPKM 21.938673 24.125973 14.782666 14.724663 22.884483 20.462889 21.948883 12.545374 12.682179 13.408008