Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00225 ATGGAGACGGTCATCGGAGCAGGGGGAGTAGACGGCGGCGGAGGAGGAGGAATTTCTCCGTTGAACGACGACATTCTTCGCAACATCTTAGGCAGACTTCCGGCTCGATCCTTCGCATCGGCGGGCTGCGTTTGTAAAACATGGAACTCCGTTTGCAATCGGATCCTCTGCCGCCCTAAATTCTCCTCCGCCGTGTCCCTCAATCCCTCTCTTCACGTTGCGGTAGAGGAGGTCCTTCAGAAAGTTCTGTCGGAGCCGATTCGGCCGCATTTCGCTATTGCCTGTATCGGCGTGGAGTTCAATCTGGAAGCCGTTCATCATCTCATCACTAAGGAATTGGGCTCAAGAACTCCTGTGATAACAAACGCAGCGAGAGGCATAATGGGCTTAGGCGCATTAACCAATGAAGTCAAGGAGGTTAAATGGGAATCAGTAGCTGATTATGATCTTGAAACTCAAGAATACAATTCAATCTTCAATCGAAATCGAGGCATTGTCCTGGCTGTCGGGTTTCTGCCCGGATTTAAGATCGATGAAATCTCGCTCCCTCGCTCGAACAAGGTGTTTCAAGGAGCCATGGTTGACAAGTTTATAATGGATATCAAGGACTTCACTGCCTCCGTCTCTGATTCCACATCTCCTTCCTGTATCATATTATTTGGAGATCATCTTGTGGATATTAAACCCATCCTTGCTAAGCTGGATTCTGCTATGGATGAAGAGACAGTGATTGTGGGCGATGCATGTGGCTTTTTCTTGAGCAAAAGCAGACGAACAATCAACAGTATTGAAGGGGTTTCCCTTGATGCTGTAGCTTTAGTACTTGCAAGGGACAAAATCAAGCCTCAAGGTTTAGGCGAAACAAGTTTCCATTTCACATCATCGACTGGAACAATCCCTTTTGGGCCAGAGTTGAGAGCTGCATCCACCAAAGTAAGAGGGTCGAGATTCACGTGGCTCTCTGCATTAATGGAAGGAGATGATGAGATCCTTTATGGGCATAGCATCCTAAAGGCTCTCAAGGAAGAGATTGAATACGACGATCTGGAAACTGACCTGTTCATTGGGGTCAGGCAAAACAGAGAACACACCATTGGTTCACAAAACTTGGGTCCTTCAACATCCTTGGCCATGTACAAAGTCTTAGGAGGAGACAAGGAGTATTTTGTAGTGGATGGCGTTGGAATCAGGCCAGGAGATTCCTTCTTATTCTACCATTCAGATTCCCAAACTGCTTCTTCTTCTTCCTACATAGCATTGGAACATCTTGCAACTCTAAAGCCACTGCCCATAACCAGAGCCACTGCAAATTCTAACACTGCCCCCCAGAAGAATCAAGTTTTTGGTGGCCTCATTTTCTCCTGCCATTGTCGAGGACCGGCCTATTTTGGACGTCCAAACGTCAATACATCGCCCTTTACCGAAAACTTCCCAGGAGTTCCGTTTGCCGGGGTGTTTTGTGCCAAGGAAATCGGTCGGGCCTTTACTAGGTCGATTAGGATGGAGGAGAAGGAGGAGAAGGAGGAGGAGGACGACGACAACGACGATGACAACGATGATGACGACGACGACGACAATGATAATAATGATGATTACGACGACGACAACGATGATGACGAGGACGACGATGATGATGAGGATGACGAGGACAAGGATTCTATTCACCGTTGCTTGCATGTTTATAGTACAGTTTATCTAGTGATGTCTCATACAGATGGATTAGTAAATTAG 1731 47.02 METVIGAGGVDGGGGGGISPLNDDILRNILGRLPARSFASAGCVCKTWNSVCNRILCRPKFSSAVSLNPSLHVAVEEVLQKVLSEPIRPHFAIACIGVEFNLEAVHHLITKELGSRTPVITNAARGIMGLGALTNEVKEVKWESVADYDLETQEYNSIFNRNRGIVLAVGFLPGFKIDEISLPRSNKVFQGAMVDKFIMDIKDFTASVSDSTSPSCIILFGDHLVDIKPILAKLDSAMDEETVIVGDACGFFLSKSRRTINSIEGVSLDAVALVLARDKIKPQGLGETSFHFTSSTGTIPFGPELRAASTKVRGSRFTWLSALMEGDDEILYGHSILKALKEEIEYDDLETDLFIGVRQNREHTIGSQNLGPSTSLAMYKVLGGDKEYFVVDGVGIRPGDSFLFYHSDSQTASSSSYIALEHLATLKPLPITRATANSNTAPQKNQVFGGLIFSCHCRGPAYFGRPNVNTSPFTENFPGVPFAGVFCAKEIGRAFTRSIRMEEKEEKEEEDDDNDDDNDDDDDDDNDNNDDYDDDNDDDEDDDDDEDDEDKDSIHRCLHVYSTVYLVMSHTDGLVN 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1465808 1469611 - CmoCh18G002250.1 Cmo18g00225 401998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00225 576 PANTHER SKP2-LIKE, FIST C DOMAIN, FIST DOMAIN, N-TERMINAL ISOFORM 1 17 508 - -
Cmo18g00225 576 SUPERFAMILY ARM repeat 490 553 IPR016024 -
Cmo18g00225 576 MobiDBLite consensus disorder prediction 505 550 - -
Cmo18g00225 576 MobiDBLite consensus disorder prediction 499 554 - -
Cmo18g00225 576 PANTHER F-BOX ONLY PROTEIN 22 17 508 - -
Cmo18g00225 576 SMART FIST_C_2 336 494 IPR019494 -
Cmo18g00225 576 SUPERFAMILY F-box domain 17 62 IPR036047 GO:0005515
Cmo18g00225 576 Gene3D - 17 58 - -
Cmo18g00225 576 SMART fbox_2 21 61 IPR001810 GO:0005515
Cmo18g00225 576 Pfam F-box domain 21 57 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00225 - - - cmos:111457244 1028.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00844 Cmo18g00225 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00844 Cmo-Chr13:7798999 Cmo18g00225 Cmo-Chr18:1465808 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g96 . . . . . . . . Cmo13g00844 Cmo18g00225 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma13g00814 Cma18g00311 . Car18g00236 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014082 0 0 0 0 0 0 2 1 1 0 1 1 2 0 0 2 1 3 2 1 0 1 0 1 1 0 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00225 Cmo_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0