Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00230 ATGGAGCTGATTCAGAGCTTCTTGAATTTAGTAGCTCCGCCGTTCACAGTCGTCTCTCTCGGCCTATTACTACCGCATTACGTCATTTTCAAGTACTTTTTCTCTTTGGTTAGAGGTTTGTTTAGCGAAGATGTCGCCGGGAAAGTCGTTCTGATCACCGGAGCTTCCTCGGGCATCGGCGAGAATTTGGCATATGAGTATGCCAAGAGAGGAGCTCAATTAGCGCTTGTAGCTAGACGAGAGAGTTCACTTGAGGAAGCTGCTGAAGCAGCTCGCTACTATGGCTCCCCTGAGGTTATCACCATTGCAGGGGATGTCTCCGATCTGTCGGACTGTCGGCGAATCATTGATGACACGATGAATCATTTCGGAAGATTGGATCATTTGGTTAACAATGCCGGCATTGCCAACATGACTCTGTTTGAAGAAATCATTGATATCACTTCCTTCAAGCAAATTATGGAAACGAACTATTGGGGGTCTGTTTATATGACTTGGCTATCAATTCCTTATTTGAAGAACAGGGGAGGGAAGATCATAGTGGTTTCATCGGCGGCGGCGTGGTTGCCGTCACCCAGAATGAGCATTTACAATGCGAGCAAGGCGGCGCTGAGGAGCTTTTTTGAGACGTTGAGAGTGGAAATGTCGCCGGAGATTGGGATCACCGTCGTGACGCCGGGCTTTGTCGAGTCGGAGATAACTAAAGGGAAGGCGTTGTATTCTCACGGGAGAATGGAAGTTCATCAGGACGTTAGAGATGTTCTGGTGGGGGCGATTCCGGTAGAGACGGCGGCGGCCTGCGCTAAGGCAATCGTGAGGAGCGCCTGCCGGGGTGATCGGTACTTGACGGAGCCGTCGTGGTACAACGCTGTGTATTACTTAAAGGCGTTATGCCCGGAGGTGGTGGAGTGGTGCTACCGTATATTGGTGTATACAACGCCGGGAACCTCCGCCGCGGAGGCGCTCAATAAACAGATTCTGGATCTCACCGGAGCCAAGACGGCCATGTATCCTCCTTCCATTCACTCCGTCGAGATCAACGACGACTGA 1050 50.86 MELIQSFLNLVAPPFTVVSLGLLLPHYVIFKYFFSLVRGLFSEDVAGKVVLITGASSGIGENLAYEYAKRGAQLALVARRESSLEEAAEAARYYGSPEVITIAGDVSDLSDCRRIIDDTMNHFGRLDHLVNNAGIANMTLFEEIIDITSFKQIMETNYWGSVYMTWLSIPYLKNRGGKIIVVSSAAAWLPSPRMSIYNASKAALRSFFETLRVEMSPEIGITVVTPGFVESEITKGKALYSHGRMEVHQDVRDVLVGAIPVETAAACAKAIVRSACRGDRYLTEPSWYNAVYYLKALCPEVVEWCYRILVYTTPGTSAAEALNKQILDLTGAKTAMYPPSIHSVEINDD 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1505401 1507816 + CmoCh18G002300.1 Cmo18g00230 402003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00230 349 Pfam short chain dehydrogenase 48 236 IPR002347 -
Cmo18g00230 349 PANTHER RETINOL DEHYDROGENASE-RELATED 1 341 - -
Cmo18g00230 349 Gene3D - 37 313 - -
Cmo18g00230 349 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 1 341 - -
Cmo18g00230 349 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Cmo18g00230 349 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Cmo18g00230 349 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Cmo18g00230 349 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Cmo18g00230 349 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Cmo18g00230 349 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Cmo18g00230 349 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Cmo18g00230 349 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Cmo18g00230 349 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Cmo18g00230 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 311 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00230 K22418 HSD1; 11beta/17beta-hydroxysteroid dehydrogenase [EC:1.1.1.146 1.1.1.-] - csv:101219132 547.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00851 Cmo18g00230 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01295 Cmo-Chr9:11493126 Cmo18g00230 Cmo-Chr18:1505401 8.57E-91 dispersed
Cmo18g00230 Cmo-Chr18:1505401 Cmo18g00564 Cmo-Chr18:4667435 1.49E-21 dispersed
Cmo18g00230 Cmo-Chr18:1505401 Cmo18g00231 Cmo-Chr18:1508349 9.89E-128 tandem
Cmo07g00518 Cmo-Chr7:2364595 Cmo18g00230 Cmo-Chr18:1505401 1.54E-18 transposed
Cmo13g00851 Cmo-Chr13:7823790 Cmo18g00230 Cmo-Chr18:1505401 1.78E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g78 . . . . . . . . Cmo13g00851 Cmo18g00230 . . . . . Cpe20g00296 . . . . . . . . . . . . . . . . . . . Lsi02g00518 Csa01g00980 Chy12g01152 Cme12g01573 . . . . . . Bma03g01242 . Sed08g2421 . . Cma13g00820 Cma18g00306 Car13g00664 Car18g00241 . . Bhi08g01520 Tan05g2993 Cmetu12g1667 Lac10g0600 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000732 2 6 3 2 1 3 2 3 3 3 1 3 4 4 4 4 3 1 2 3 3 5 4 4 3 3 4 2 4 4 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00230 Cmo_Chr18 FPKM 5.509282 3.980163 12.75225 14.14295 12.953381 11.054271 14.16709 12.104428 15.028318 17.899708