Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00235 ATGGGTTGCGTTCTTGGCAGACAAGTCGCCAATGATTCCCGGAGCCCATCCAGACCTCCCCGTCGCCGTCGGAGCATTGATCACCACTCTCATATCGACGGAGTTAATGGCAAGAGTGTTATGGAACAGACGACATCGGCAGAAAAACAAGGAGTTAGGCAGGATGTGGATTCCTTGTCTGTAGAGCACCGGAGGCCTTCACCGAGTATTTGTCAGAGAAATGAGCAAGGCTGGCCGGCGTGGTTGCTAGAGGTTGCCGGTGAAGTGATGGAAGACTGGACGCCTCGTCGCGCTAATACATTTGAGAAGCTTGCTAAAATAGGGCAAGGGACGTATAGCAATGTGTACAAGGCGAGGGATCTTATTACTGGGAAAATTGTTGCTCTGAAGAAGGTCAGGTTTGATAATTTAGAACCGGAGAGCGTAAGATTTATGGCCAGAGAGATTTTGGTTCTGAGACGCCTCGATCATCCCAATGTGCTTAAGCTTGAGGGCTTAGTTACTTCCAGAATGTCGTGTAGTCTTTACTTAGTGTTCGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAGTTCACGGAACCTCAGGTTAAATGCTACATGAAGCAATTATTGTCTGGGCTTGAACATTGTCACAATCGAGGAGTTTTGCATCGTGATATAAAGGGTTCCAATTTGCTAATTGACAACGAAGGAATACTTAAAATAGCTGATTTTGGGTTAGCTACTTTTTTTGATCCTCAACAGAAGCAACATATGACTAGTCGAGTAGTAACCCTTTGGTACCGTCCTCCTGAACTATTGCTTGGAGCTACTCTTTATGGTATAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTCGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTTGAACAACTCCATAAGATATTTAAATTGTGTGGTTCTCCAACGGAGGATTACTGGAAGAAATACAAATTGCCGAATGCAACTCTTTTTAAACCCCAACATCCATACAAACGCTGCATTGCGGAAACATTCAAGGATTTTCCATCTTCTTCTCTACCTCTCATCGAATCTCTCCTTACAATGGACCCTGATGGGCGAGGTACTGCCTCTGCTGCTCTCAATAGCGAATTCTTCACTACCAACCCTCTTGCTTGTGAACCATCAAGTCTGCCTAAATATCCTCCATGCAAAGAATTGGATATAAAGTTGAGAGATGAGGAGGCTAGAAGGCGAAGAAGACTAAGTGGGAAAGCAACAGCTGCTGATGGTGGTGGCAGGAGAGTACGAGTACGGGATCGAGTTACTCGGGCTGTCCCAGCTCCTGAAGCTAATGCAGAGATACAATCAAACTTAGATAGGTGGAGAAACACGACCAAATCAAATGCTAAGAGCAAGAGCGAGAAGTTTCCCCCACCCCATCAAGATGGGGCAGTAGGGTATCCGCCACACGAGACATCCCAGAGGGGCCATTCATCATTTGGCGCAGCTGATGCTTCATTCAGCTCCTCAATCTTTAGTTCAAAGTCTGAATCTATCAAAACTACAGGAGCTCCAGAGGGACCTTCCCGGAGAAAGAGAACCAACAGAGATACTTCATCTCGAAAATTCATGCGTGCACTCAAGCCATCAATCGGGCTATCAATGGATCTGTTGTTTAGAGGTAAATAA 1689 46.65 MGCVLGRQVANDSRSPSRPPRRRRSIDHHSHIDGVNGKSVMEQTTSAEKQGVRQDVDSLSVEHRRPSPSICQRNEQGWPAWLLEVAGEVMEDWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLRRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPQQKQHMTSRVVTLWYRPPELLLGATLYGIGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPTEDYWKKYKLPNATLFKPQHPYKRCIAETFKDFPSSSLPLIESLLTMDPDGRGTASAALNSEFFTTNPLACEPSSLPKYPPCKELDIKLRDEEARRRRRLSGKATAADGGGRRVRVRDRVTRAVPAPEANAEIQSNLDRWRNTTKSNAKSKSEKFPPPHQDGAVGYPPHETSQRGHSSFGAADASFSSSIFSSKSESIKTTGAPEGPSRRKRTNRDTSSRKFMRALKPSIGLSMDLLFRGK 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1536998 1541439 - CmoCh18G002350.1 Cmo18g00235 402008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00235 562 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 58 533 - -
Cmo18g00235 562 MobiDBLite consensus disorder prediction 16 35 - -
Cmo18g00235 562 SUPERFAMILY Protein kinase-like (PK-like) 95 390 IPR011009 -
Cmo18g00235 562 CDD STKc_CDK9_like 101 385 - -
Cmo18g00235 562 MobiDBLite consensus disorder prediction 1 70 - -
Cmo18g00235 562 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00235 562 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Cmo18g00235 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Cmo18g00235 562 MobiDBLite consensus disorder prediction 37 53 - -
Cmo18g00235 562 MobiDBLite consensus disorder prediction 526 543 - -
Cmo18g00235 562 MobiDBLite consensus disorder prediction 492 523 - -
Cmo18g00235 562 Gene3D Phosphorylase Kinase; domain 1 87 183 - -
Cmo18g00235 562 Gene3D Transferase(Phosphotransferase) domain 1 184 424 - -
Cmo18g00235 562 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00235 562 SMART serkin_6 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00235 562 MobiDBLite consensus disorder prediction 417 545 - -
Cmo18g00235 562 PANTHER CELL DIVISION PROTEIN KINASE 58 533 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01117 Cmo-Chr12:10215589 Cmo18g00235 Cmo-Chr18:1536998 0 dispersed
Cmo14g01688 Cmo-Chr14:13249022 Cmo18g00235 Cmo-Chr18:1536998 0 dispersed
Cmo18g00235 Cmo-Chr18:1536998 Cmo04g00583 Cmo-Chr4:2911153 0 dispersed
Cmo09g01213 Cmo-Chr9:9362476 Cmo18g00235 Cmo-Chr18:1536998 1.92E-150 transposed
Cmo13g00857 Cmo-Chr13:7852988 Cmo18g00235 Cmo-Chr18:1536998 1.29E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75040 PF00069 Pkinase 4.50E-67 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00235 K08819 - csv:101205716 919.072