Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00236 ATGAAAATACCGCCGGAGAACGACCAGTTTGCTCTTTCAAACGACCGGATTTCTTCTCTTCTTGATGATATTCCGCTCATCAACAATTTCAAGGGGAAATGGTCTTCAATCAGAGCGAAACTCTCCGATCTTCGCACACAGTTGATGGATGTTTCTGAGTTTCCGAATTCGTCTTCCAATCCTCTTTCTGTTGATTTTCTTCATTCTGTTTTGGAAGTTCTTAGTGAGGCGGCTTCTCTCTCGGAGAAGTGCCGGAATCCGGAACTTTCCGATGGTAAACTCAAGACTCAGAGCGATATTGACTCGGTTCTTGCGAAGTTGGACTCTCTACTTAAAGATGGTGAGGTTTTGATTCGGAGTGAGATTCTTCATGATGGTGCGGTTTCGAGTTCGTCGTCTAGGAGGGAGGCTGTGCGGGCGGAGTCGAGGAATTTAATCACGAGGTTACAGATTGGAAGCATTGAATCGAGGGTATTGGCTATTGAATCGCTGTTGAAGTTGTTGAATGAGGATGATAAGAATGTAACGATTGCTGCGGCTCAAGGGATTGTTCCTGTTCTTGTTCGGCTACTGGATTCCAGTTCTTTAGAACTGAAGGAACGGGCTGTTGCTGCTATTTCCATCGTTTCATCGGTGGATGGTGTTAGGCATTTAATGATTGCTGAAGGTCTACAGCTTTTGAATCACTTGTTGAGGATTCTCGATTCTGGTAGCGGTTTTGCTAAGGAGAAGGCCTGTTTAACCCTCCAACCTCTAAGCATTTCGAAAGAAAATGCGAGATCAATCGGTTCTAGAGGAGGAATTTCATCTCTGTTGGAGATTTGTGAGGCCGGCACTCCCGGTTCTCAAGCCTCAGCAGCTGCTGTTCTTAGAAATCTTGCATCATTTGGTGAAATTAAAGAGAATTTCATTGAAGAAAATGGGGTTATTGTTCTTTTGGGGCTCTTAGCCTCGGGAACTCCGTTAGCTCAAGAAAATGCAATTGGATGTCTATGTAATTTAGTTGCAGAAGATGATAATCTGAAGCTCTTGATCGTTAGAGAAGGTGGGATCGAGCTCTTGAGAAGTTTCTGGGATTCATCTCCATCAGTTCATAGTCTCGAAGTGGCTGTGGAGCTTTTGGGGCTCTTGGCTTCATCTTCCCCGATCGCTGAAGCTCTTATTTCAAATGGGTTTGTTGATCGGCTTCTTCCAGCTCTAAGCTGCGGAGTATTAGGCGTTAGAACTGCAGCAGCTCGAGCAGTTCACGAGCTCGGATTCTGCACAAAAACAAGAAAAGAAATGGGGGAAGCTGGATTCATCACACCCTTGGTTAATATGCTAGATGGCAAGTCTGTTGAGGAGAAGGAAGCAGCTGCCAAGGCATTGTCTTCTCTATTACAATACACAGGTAACAGAAAAATTTTCCAGAACGAAGAGAAAGGGATAGTAAGTGCAGTCCAACTCTTAGACCCTTCAATATCAAATCTAGACAAGAAGTACCCTGTTTCATTATTAGCCTCGGTTATGATATCAAGCAAGTGTAGAAAGCAGATGGCTGCTGCTGGTGCTGGTTTATATCTTCAAAAGCTTGTTGAAATGAATGTTGATGGATCAAAGAAACTATTGGAATGTCTTGGCCGAGGTTTTGATTCCCATCTGAAAGTTTTCTTCAATGAAACTGGTGGAGAAGGTGGCATGGTCTGCTCTGGTTTGTCCTGA 1701 44.03 MKIPPENDQFALSNDRISSLLDDIPLINNFKGKWSSIRAKLSDLRTQLMDVSEFPNSSSNPLSVDFLHSVLEVLSEAASLSEKCRNPELSDGKLKTQSDIDSVLAKLDSLLKDGEVLIRSEILHDGAVSSSSSRREAVRAESRNLITRLQIGSIESRVLAIESLLKLLNEDDKNVTIAAAQGIVPVLVRLLDSSSLELKERAVAAISIVSSVDGVRHLMIAEGLQLLNHLLRILDSGSGFAKEKACLTLQPLSISKENARSIGSRGGISSLLEICEAGTPGSQASAAAVLRNLASFGEIKENFIEENGVIVLLGLLASGTPLAQENAIGCLCNLVAEDDNLKLLIVREGGIELLRSFWDSSPSVHSLEVAVELLGLLASSSPIAEALISNGFVDRLLPALSCGVLGVRTAAARAVHELGFCTKTRKEMGEAGFITPLVNMLDGKSVEEKEAAAKALSSLLQYTGNRKIFQNEEKGIVSAVQLLDPSISNLDKKYPVSLLASVMISSKCRKQMAAAGAGLYLQKLVEMNVDGSKKLLECLGRGFDSHLKVFFNETGGEGGMVCSGLS 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1547437 1549581 - CmoCh18G002360.1 Cmo18g00236 402009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00236 566 Gene3D - 130 357 IPR011989 -
Cmo18g00236 566 Pfam Armadillo/beta-catenin-like repeat 176 207 IPR000225 GO:0005515
Cmo18g00236 566 SMART arm_5 380 420 IPR000225 GO:0005515
Cmo18g00236 566 SMART arm_5 421 461 IPR000225 GO:0005515
Cmo18g00236 566 SMART arm_5 338 379 IPR000225 GO:0005515
Cmo18g00236 566 SMART arm_5 296 336 IPR000225 GO:0005515
Cmo18g00236 566 SMART arm_5 171 211 IPR000225 GO:0005515
Cmo18g00236 566 SMART arm_5 255 295 IPR000225 GO:0005515
Cmo18g00236 566 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 7 542 - -
Cmo18g00236 566 Gene3D - 358 541 IPR011989 -
Cmo18g00236 566 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 542 - -
Cmo18g00236 566 SUPERFAMILY ARM repeat 144 489 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00236 - - - csv:101203406 890.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00900 Cmo-Chr8:5863588 Cmo18g00236 Cmo-Chr18:1547437 2.97E-92 dispersed
Cmo11g02012 Cmo-Chr11:13741344 Cmo18g00236 Cmo-Chr18:1547437 4.43E-85 dispersed
Cmo13g00438 Cmo-Chr13:5498562 Cmo18g00236 Cmo-Chr18:1547437 0 dispersed
Cmo17g00018 Cmo-Chr17:81489 Cmo18g00236 Cmo-Chr18:1547437 6.59E-89 dispersed
Cmo18g00236 Cmo-Chr18:1547437 Cmo19g01074 Cmo-Chr19:9271750 3.18E-80 dispersed
Cmo18g00236 Cmo-Chr18:1547437 Cmo14g02067 Cmo-Chr14:15075992 1.51E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g43 . . . Bda15g00690 Bpe12g00464 . . . . Cmo18g00236 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0250 Cone19ag0232 . . . . . Blo15g00195 . . . . . Bma08g00274 . . . . Cma18g00298 . Car18g00246 Cpe09g00945 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003996 1 3 1 1 1 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 2 1 1 1 1 4 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00236 Cmo_Chr18 FPKM 12.02924 8.803327 18.13728 20.42487 5.839083 3.866796 6.028481 7.149238 8.688322 8.753525