Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00237 ATGGCAGCCTTTTCATATCAATACCAACCTTTTCTTCTTGACTCAATCCTTCAAGCCAACAATCCCCTCAAAATGGATGGCTTTTTGGATGAACCAAATTTCAATATCAATTGCTTCACTCAATTCTTCGCTCAAGAACAAGAACAAGAACAACCCATTCACCGTTTTCCCGACCTTTGTAAACAGAGCCCTGAATCTTTCAGTTTGGTCGAGAAATCCGATAGCGGTGAGCCACCGGTCGTAAGTCAGTCGAAGCCGACTGTGACTTCCCCTTGTAGTAAGAAAAGGAAGAGCCGTGGAAATAACTCATCGGCTATCTCCGCTCAATCTAAGGAAAGCATTGGGAAGAAGGTGAAAACTAAAAGGGAATTGGATGAAAGGAAAGAAGGAGATGAAAAGGGCAAAACGGGGAAAAAAGAGGAGAAAAAGGCTTCAGAAGATGGTGCTCCGACTGGTTATATTCACGTCAGAGCTAAGAGGGGCCAAGCCACTGATAGCCACAGCCTTGCTGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACATTACAACGACTTGTTCCCGGTTGTGACAAGGTAACAGGGAAGGCGCTCATGTTGGATGAGATTATCAACTATGTTCAGTCTCTACAAAATCAAGTTGAGTTTCTCTCTATGAAGCTCGCTTCTTTGAACCCAATTCTCTTCGACTTCAGAATGGACTTAGACGGCCTCATGATCCAACCCGAGTCATCGTCCTTGAGTAGCATAACGCCACAACTACCCGCAATGGCACAATGCAGCGTCATATCACCGCCAACATTGATCGACACCACCACAACAACAACACCAACCCCAACAATCGCCACCCCAAATTCCTATCCATTAACAGACAATTCAGCTAATTTGTTTCTACTACAACAAGTGATGAATCCAAACGCGTACACTCAATCTCAGGACAACGTTAAGGTTTCATCATTGGACGTCGAAGAACATAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAACTTGAGCTACTTCCATTAA 1038 44.03 MAAFSYQYQPFLLDSILQANNPLKMDGFLDEPNFNINCFTQFFAQEQEQEQPIHRFPDLCKQSPESFSLVEKSDSGEPPVVSQSKPTVTSPCSKKRKSRGNNSSAISAQSKESIGKKVKTKRELDERKEGDEKGKTGKKEEKKASEDGAPTGYIHVRAKRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPILFDFRMDLDGLMIQPESSSLSSITPQLPAMAQCSVISPPTLIDTTTTTTPTPTIATPNSYPLTDNSANLFLLQQVMNPNAYTQSQDNVKVSSLDVEEHKRKLLISSGIGDNLSYFH 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1559926 1562454 - CmoCh18G002370.1 Cmo18g00237 402010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00237 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 228 IPR036638 GO:0046983
Cmo18g00237 345 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 345 - -
Cmo18g00237 345 MobiDBLite consensus disorder prediction 77 113 - -
Cmo18g00237 345 CDD bHLH_AtBPE_like 152 237 - -
Cmo18g00237 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Cmo18g00237 345 SMART finulus 168 218 IPR011598 GO:0046983
Cmo18g00237 345 MobiDBLite consensus disorder prediction 66 154 - -
Cmo18g00237 345 Gene3D - 159 230 IPR036638 GO:0046983
Cmo18g00237 345 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 345 IPR024097 GO:0006355
Cmo18g00237 345 MobiDBLite consensus disorder prediction 114 148 - -
Cmo18g00237 345 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00026 Cmo18g00237 CCT
Cmo13g00858 Cmo18g00237 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00237 Cmo-Chr18:1559926 Cmo14g01559 Cmo-Chr14:12449597 1.74E-44 dispersed
Cmo10g00026 Cmo-Chr10:144859 Cmo18g00237 Cmo-Chr18:1559926 1.64E-44 wgd
Cmo13g00858 Cmo-Chr13:7861441 Cmo18g00237 Cmo-Chr18:1559926 3.12E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11484 PF00010 HLH 6.60E-07 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00237 - K18878 csv:101205943 449.899