Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00237 | ATGGCAGCCTTTTCATATCAATACCAACCTTTTCTTCTTGACTCAATCCTTCAAGCCAACAATCCCCTCAAAATGGATGGCTTTTTGGATGAACCAAATTTCAATATCAATTGCTTCACTCAATTCTTCGCTCAAGAACAAGAACAAGAACAACCCATTCACCGTTTTCCCGACCTTTGTAAACAGAGCCCTGAATCTTTCAGTTTGGTCGAGAAATCCGATAGCGGTGAGCCACCGGTCGTAAGTCAGTCGAAGCCGACTGTGACTTCCCCTTGTAGTAAGAAAAGGAAGAGCCGTGGAAATAACTCATCGGCTATCTCCGCTCAATCTAAGGAAAGCATTGGGAAGAAGGTGAAAACTAAAAGGGAATTGGATGAAAGGAAAGAAGGAGATGAAAAGGGCAAAACGGGGAAAAAAGAGGAGAAAAAGGCTTCAGAAGATGGTGCTCCGACTGGTTATATTCACGTCAGAGCTAAGAGGGGCCAAGCCACTGATAGCCACAGCCTTGCTGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACATTACAACGACTTGTTCCCGGTTGTGACAAGGTAACAGGGAAGGCGCTCATGTTGGATGAGATTATCAACTATGTTCAGTCTCTACAAAATCAAGTTGAGTTTCTCTCTATGAAGCTCGCTTCTTTGAACCCAATTCTCTTCGACTTCAGAATGGACTTAGACGGCCTCATGATCCAACCCGAGTCATCGTCCTTGAGTAGCATAACGCCACAACTACCCGCAATGGCACAATGCAGCGTCATATCACCGCCAACATTGATCGACACCACCACAACAACAACACCAACCCCAACAATCGCCACCCCAAATTCCTATCCATTAACAGACAATTCAGCTAATTTGTTTCTACTACAACAAGTGATGAATCCAAACGCGTACACTCAATCTCAGGACAACGTTAAGGTTTCATCATTGGACGTCGAAGAACATAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAACTTGAGCTACTTCCATTAA | 1038 | 44.03 | MAAFSYQYQPFLLDSILQANNPLKMDGFLDEPNFNINCFTQFFAQEQEQEQPIHRFPDLCKQSPESFSLVEKSDSGEPPVVSQSKPTVTSPCSKKRKSRGNNSSAISAQSKESIGKKVKTKRELDERKEGDEKGKTGKKEEKKASEDGAPTGYIHVRAKRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPILFDFRMDLDGLMIQPESSSLSSITPQLPAMAQCSVISPPTLIDTTTTTTPTPTIATPNSYPLTDNSANLFLLQQVMNPNAYTQSQDNVKVSSLDVEEHKRKLLISSGIGDNLSYFH | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 1559926 | 1562454 | - | CmoCh18G002370.1 | Cmo18g00237 | 402010 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00237 | 345 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 160 | 228 | IPR036638 | GO:0046983 | |
Cmo18g00237 | 345 | PANTHER | BASIC HELIX LOOP HELIX PROTEIN BHLH8 | 1 | 345 | - | - | |
Cmo18g00237 | 345 | MobiDBLite | consensus disorder prediction | 77 | 113 | - | - | |
Cmo18g00237 | 345 | CDD | bHLH_AtBPE_like | 152 | 237 | - | - | |
Cmo18g00237 | 345 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 162 | 212 | IPR011598 | GO:0046983 | |
Cmo18g00237 | 345 | SMART | finulus | 168 | 218 | IPR011598 | GO:0046983 | |
Cmo18g00237 | 345 | MobiDBLite | consensus disorder prediction | 66 | 154 | - | - | |
Cmo18g00237 | 345 | Gene3D | - | 159 | 230 | IPR036638 | GO:0046983 | |
Cmo18g00237 | 345 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 1 | 345 | IPR024097 | GO:0006355 | |
Cmo18g00237 | 345 | MobiDBLite | consensus disorder prediction | 114 | 148 | - | - | |
Cmo18g00237 | 345 | Pfam | Helix-loop-helix DNA-binding domain | 166 | 213 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00026 | Cmo18g00237 | CCT | |
Cmo13g00858 | Cmo18g00237 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo18g00237 | Cmo-Chr18:1559926 | Cmo14g01559 | Cmo-Chr14:12449597 | 1.74E-44 | dispersed | |
Cmo10g00026 | Cmo-Chr10:144859 | Cmo18g00237 | Cmo-Chr18:1559926 | 1.64E-44 | wgd | |
Cmo13g00858 | Cmo-Chr13:7861441 | Cmo18g00237 | Cmo-Chr18:1559926 | 3.12E-154 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11484 | PF00010 | HLH | 6.60E-07 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00237 | - | K18878 | csv:101205943 | 449.899 |