Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00238 | ATGCTTTCCAGAGTTGGGAGCGTCGGTTGGATGGAGAATCGAGAGGATGAAGGCTCTGCTTCCTGGACTAATAACGACACCCACAACCATCTCAATCACCCTGCTGCTAATTGCTCTGTTTTGGATAACAAGGACCAAATCAGCTCTCTCTCTACCTTCAAATCCATGCTTGAGGTTGAAGATGACTGGTGCATTGCTGCTAATGCCCTCCATAACCATAACGACATCAACGGCATAAGCTTCTCTCAGAATTTCACTGACCCACCTGATAATTTGTTGCTTCCCCATGGAGATTCATCCTCTTCTTGTTCCCCTTCTTCCTCTGTGTTCAATAACATTGACCCATCTCAATTGCAGTTCTTCTTACCCCCAACTCGCACTTTATCTTCCCTTTACAAGGTCATTGGTAATAACCCTTTAGAGCATGGCTTCGATTTCGGGGCAGAGGTTGGGTTTCTTGATGTCCAAGCTTCGAATACTTCGGCTCTGCTCAGCAGTGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCAACAAGTCAGATGAACAGTCCTAATATGTGCTTAGGCTCTCAATTGACAACACCTAACCTGCCCCAAATGACTGGAAATTGTTCGGGTTTAGCGGGATTCCAGAGTTTGGATGAGAATTTGGGAAATGCTCTGCTTCTGAATCGGTCTAAGCTTTTGAGACCACTTGAATCCTTTCCCTCAGTGGGAACTCAGCCGACTCTTTTTCAGAAGAGGGCAGCTCTAAGGAAAAGCTTAGCTGATAAGGGAAGCAATTTGGGGGTTTTGAGCCCCGATGGCGGCTGGTGTTCTAACAGGATTGAAGGGGGTGTTGGGAAAAATGAAGTGGGTGATGAAAATGCGAAGAGGAAAATGATTTATGCAGATGAGATGCAAGAAACTAGCATCGACACAACCCGTTTCAACTACGATTCTGATGACTTTACTGAGAATAATGACACTAAGTTGGATGAGAGTGGTAGAAATGTTGGAAGTACTTCTAACGCCAATAGTACAGTGACCGGCGGCGATCAGAAGGGAAAGAAGAAAGGACTTCCGGCGAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAACTCAATGATAGGCTCTACATGCTGAGGTCCGTTGTTCCCAAAATCAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTACCTGAAGGAACTACTGCAAAGAATCAATGACCTTCATAATGAATTGGAATTTTCTCCTTCCGGTACAGCGTTGACGCCGAGCACAAGCTTTCACCCCCTGACTCCAACCCCACCGACCCTCTCGAGTCGTATAAAGGAAGAGCTTTGTCCTAGCTCATTTCCCAGCCCTAATGGCCAACCTGCAAGGGTCGAAGTTAGGGTACGAGAAGGTCGGGCAGTAAACATACACATGTTCTGTGGTCGTCGACCTGGTCTCTTGCTCTCCTCAGTTAGGGCATTAGATAATCTTGGCTTAGACATCCAGCAAGCTGTGATTAGCTGCTTCAATGGTTTTGCCATGGACATTTTCCGAGCAGAGCAATGCAGCGAAGGCCAAGATGTCCATCCTGAGCAGATAAAAGCAATACTATTGGATTCAGTAGGTTTCAATGGTAGCTGCTGA | 1641 | 46.37 | MLSRVGSVGWMENREDEGSASWTNNDTHNHLNHPAANCSVLDNKDQISSLSTFKSMLEVEDDWCIAANALHNHNDINGISFSQNFTDPPDNLLLPHGDSSSSCSPSSSVFNNIDPSQLQFFLPPTRTLSSLYKVIGNNPLEHGFDFGAEVGFLDVQASNTSALLSSGGGLLTGFTDLSPTSQMNSPNMCLGSQLTTPNLPQMTGNCSGLAGFQSLDENLGNALLLNRSKLLRPLESFPSVGTQPTLFQKRAALRKSLADKGSNLGVLSPDGGWCSNRIEGGVGKNEVGDENAKRKMIYADEMQETSIDTTRFNYDSDDFTENNDTKLDESGRNVGSTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFSPSGTALTPSTSFHPLTPTPPTLSSRIKEELCPSSFPSPNGQPARVEVRVREGRAVNIHMFCGRRPGLLLSSVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDVHPEQIKAILLDSVGFNGSC | 546 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 1579409 | 1583411 | + | CmoCh18G002380.1 | Cmo18g00238 | 402011 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00238 | 546 | MobiDBLite | consensus disorder prediction | 314 | 328 | - | - | |
Cmo18g00238 | 546 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 97 | 544 | - | - | |
Cmo18g00238 | 546 | Pfam | Helix-loop-helix DNA-binding domain | 362 | 404 | IPR011598 | GO:0046983 | |
Cmo18g00238 | 546 | CDD | bHLH_AtAMS_like | 358 | 421 | - | - | |
Cmo18g00238 | 546 | MobiDBLite | consensus disorder prediction | 421 | 441 | - | - | |
Cmo18g00238 | 546 | Gene3D | - | 349 | 418 | IPR036638 | GO:0046983 | |
Cmo18g00238 | 546 | CDD | ACT_UUR-ACR-like | 475 | 535 | - | - | |
Cmo18g00238 | 546 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 355 | 404 | IPR011598 | GO:0046983 | |
Cmo18g00238 | 546 | Coils | Coil | 394 | 414 | - | - | |
Cmo18g00238 | 546 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cmo18g00238 | 546 | MobiDBLite | consensus disorder prediction | 312 | 359 | - | - | |
Cmo18g00238 | 546 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 358 | 422 | IPR036638 | GO:0046983 | |
Cmo18g00238 | 546 | MobiDBLite | consensus disorder prediction | 329 | 348 | - | - | |
Cmo18g00238 | 546 | SMART | finulus | 361 | 410 | IPR011598 | GO:0046983 | |
Cmo18g00238 | 546 | PANTHER | BHLH TRANSCRIPTIONAL FACTOR | 97 | 544 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00895 | Cmo-Chr3:6930028 | Cmo18g00238 | Cmo-Chr18:1579409 | 1.97E-41 | dispersed | |
Cmo07g00598 | Cmo-Chr7:2685687 | Cmo18g00238 | Cmo-Chr18:1579409 | 1.67E-37 | dispersed | |
Cmo12g00135 | Cmo-Chr12:844845 | Cmo18g00238 | Cmo-Chr18:1579409 | 2.16E-43 | dispersed | |
Cmo14g00777 | Cmo-Chr14:3943672 | Cmo18g00238 | Cmo-Chr18:1579409 | 7.57E-152 | dispersed | |
Cmo13g00860 | Cmo-Chr13:7869398 | Cmo18g00238 | Cmo-Chr18:1579409 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11485 | PF00010 | HLH | 2.10E-09 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00238 | - | - | cpep:111802474 | 1006.9 |