Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00238 ATGCTTTCCAGAGTTGGGAGCGTCGGTTGGATGGAGAATCGAGAGGATGAAGGCTCTGCTTCCTGGACTAATAACGACACCCACAACCATCTCAATCACCCTGCTGCTAATTGCTCTGTTTTGGATAACAAGGACCAAATCAGCTCTCTCTCTACCTTCAAATCCATGCTTGAGGTTGAAGATGACTGGTGCATTGCTGCTAATGCCCTCCATAACCATAACGACATCAACGGCATAAGCTTCTCTCAGAATTTCACTGACCCACCTGATAATTTGTTGCTTCCCCATGGAGATTCATCCTCTTCTTGTTCCCCTTCTTCCTCTGTGTTCAATAACATTGACCCATCTCAATTGCAGTTCTTCTTACCCCCAACTCGCACTTTATCTTCCCTTTACAAGGTCATTGGTAATAACCCTTTAGAGCATGGCTTCGATTTCGGGGCAGAGGTTGGGTTTCTTGATGTCCAAGCTTCGAATACTTCGGCTCTGCTCAGCAGTGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCAACAAGTCAGATGAACAGTCCTAATATGTGCTTAGGCTCTCAATTGACAACACCTAACCTGCCCCAAATGACTGGAAATTGTTCGGGTTTAGCGGGATTCCAGAGTTTGGATGAGAATTTGGGAAATGCTCTGCTTCTGAATCGGTCTAAGCTTTTGAGACCACTTGAATCCTTTCCCTCAGTGGGAACTCAGCCGACTCTTTTTCAGAAGAGGGCAGCTCTAAGGAAAAGCTTAGCTGATAAGGGAAGCAATTTGGGGGTTTTGAGCCCCGATGGCGGCTGGTGTTCTAACAGGATTGAAGGGGGTGTTGGGAAAAATGAAGTGGGTGATGAAAATGCGAAGAGGAAAATGATTTATGCAGATGAGATGCAAGAAACTAGCATCGACACAACCCGTTTCAACTACGATTCTGATGACTTTACTGAGAATAATGACACTAAGTTGGATGAGAGTGGTAGAAATGTTGGAAGTACTTCTAACGCCAATAGTACAGTGACCGGCGGCGATCAGAAGGGAAAGAAGAAAGGACTTCCGGCGAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAACTCAATGATAGGCTCTACATGCTGAGGTCCGTTGTTCCCAAAATCAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTACCTGAAGGAACTACTGCAAAGAATCAATGACCTTCATAATGAATTGGAATTTTCTCCTTCCGGTACAGCGTTGACGCCGAGCACAAGCTTTCACCCCCTGACTCCAACCCCACCGACCCTCTCGAGTCGTATAAAGGAAGAGCTTTGTCCTAGCTCATTTCCCAGCCCTAATGGCCAACCTGCAAGGGTCGAAGTTAGGGTACGAGAAGGTCGGGCAGTAAACATACACATGTTCTGTGGTCGTCGACCTGGTCTCTTGCTCTCCTCAGTTAGGGCATTAGATAATCTTGGCTTAGACATCCAGCAAGCTGTGATTAGCTGCTTCAATGGTTTTGCCATGGACATTTTCCGAGCAGAGCAATGCAGCGAAGGCCAAGATGTCCATCCTGAGCAGATAAAAGCAATACTATTGGATTCAGTAGGTTTCAATGGTAGCTGCTGA 1641 46.37 MLSRVGSVGWMENREDEGSASWTNNDTHNHLNHPAANCSVLDNKDQISSLSTFKSMLEVEDDWCIAANALHNHNDINGISFSQNFTDPPDNLLLPHGDSSSSCSPSSSVFNNIDPSQLQFFLPPTRTLSSLYKVIGNNPLEHGFDFGAEVGFLDVQASNTSALLSSGGGLLTGFTDLSPTSQMNSPNMCLGSQLTTPNLPQMTGNCSGLAGFQSLDENLGNALLLNRSKLLRPLESFPSVGTQPTLFQKRAALRKSLADKGSNLGVLSPDGGWCSNRIEGGVGKNEVGDENAKRKMIYADEMQETSIDTTRFNYDSDDFTENNDTKLDESGRNVGSTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFSPSGTALTPSTSFHPLTPTPPTLSSRIKEELCPSSFPSPNGQPARVEVRVREGRAVNIHMFCGRRPGLLLSSVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDVHPEQIKAILLDSVGFNGSC 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1579409 1583411 + CmoCh18G002380.1 Cmo18g00238 402011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00238 546 MobiDBLite consensus disorder prediction 314 328 - -
Cmo18g00238 546 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 97 544 - -
Cmo18g00238 546 Pfam Helix-loop-helix DNA-binding domain 362 404 IPR011598 GO:0046983
Cmo18g00238 546 CDD bHLH_AtAMS_like 358 421 - -
Cmo18g00238 546 MobiDBLite consensus disorder prediction 421 441 - -
Cmo18g00238 546 Gene3D - 349 418 IPR036638 GO:0046983
Cmo18g00238 546 CDD ACT_UUR-ACR-like 475 535 - -
Cmo18g00238 546 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 404 IPR011598 GO:0046983
Cmo18g00238 546 Coils Coil 394 414 - -
Cmo18g00238 546 MobiDBLite consensus disorder prediction 1 28 - -
Cmo18g00238 546 MobiDBLite consensus disorder prediction 312 359 - -
Cmo18g00238 546 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 422 IPR036638 GO:0046983
Cmo18g00238 546 MobiDBLite consensus disorder prediction 329 348 - -
Cmo18g00238 546 SMART finulus 361 410 IPR011598 GO:0046983
Cmo18g00238 546 PANTHER BHLH TRANSCRIPTIONAL FACTOR 97 544 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00895 Cmo-Chr3:6930028 Cmo18g00238 Cmo-Chr18:1579409 1.97E-41 dispersed
Cmo07g00598 Cmo-Chr7:2685687 Cmo18g00238 Cmo-Chr18:1579409 1.67E-37 dispersed
Cmo12g00135 Cmo-Chr12:844845 Cmo18g00238 Cmo-Chr18:1579409 2.16E-43 dispersed
Cmo14g00777 Cmo-Chr14:3943672 Cmo18g00238 Cmo-Chr18:1579409 7.57E-152 dispersed
Cmo13g00860 Cmo-Chr13:7869398 Cmo18g00238 Cmo-Chr18:1579409 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11485 PF00010 HLH 2.10E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00238 - - cpep:111802474 1006.9