Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00243 ATGAAAGCGGTGGTCTTGTTGTCAGTTATTTTCCTAATTCAGGCAGCCGCCGTGGTGTCGTCGGCCGACAAAGAGTACGATGATGACGGGGAAGAATACACGAGCCTTGAGGTTCCACTGTTGCCGGAGTCTTCAGATTTCGACGACTTTCTTTCGTACGGATTCTACCGGAAAAGTTGCCCCGGCGTTGACCGCATCATTCACCAGAAACTCAAGCAGTGGTACGATGAGGATAACACTATTGCCGCCAGCATCATCAGACTCCATTTCCACGACTGCGTTGTCAGGCCACTAACAAAGCCGCCGCCGGCCGGGGTGGTGAAACCGCAGGGCTGCGACGCTTCGATTCTTCTGGATTACGAGGGAAGCGAGAGGAGGGCTCCGGCGAGCAAGACGCTGAGAGGGTTCGAAGTGATCGACGACATCAAAGCAGAGCTAGAGAAAAAATGCCCCAAAACAGTTTCTTGCGCAGATATTCTGACCGCCGCCGCCCGAGAGGCCACCATTCTCGTCGGCGGCCCATATTGGACGGTGCCTTATGGTAGACGAGATGGAGTGGATTCCATCGGCAGCGAAACTGGATTGAGCAGGCTTTACAACTATAGCGGAACGGGCAAACCAGACCCATCAATGAGCACAAGCTACGTCAATTTCTTGAGAAGAAAATGCCGATGGGCGTCGGATTACGTCGACCTTGACGCCACGACACCGAACAAATTCGACAACGCCTACTACACGAATCTGCCAAAAAAGATGGGTCTTTTGCCGAGCGATTCAGCTCTGTATACCGACCGAAGAACTGCGCCCATCGTCAAGGCTTTGGCGTATCAGCCATCCCTTTTCCGCCTCCAATTTGCTGTGTCCATGGCTAAGCTTGGGAATGTTCAAGTTCTTAATGATCTTTTTGAAGGGGAGATTCGAACCAACTGCAGTTGTAGGAATTATTAA 948 51.9 MKAVVLLSVIFLIQAAAVVSSADKEYDDDGEEYTSLEVPLLPESSDFDDFLSYGFYRKSCPGVDRIIHQKLKQWYDEDNTIAASIIRLHFHDCVVRPLTKPPPAGVVKPQGCDASILLDYEGSERRAPASKTLRGFEVIDDIKAELEKKCPKTVSCADILTAAAREATILVGGPYWTVPYGRRDGVDSIGSETGLSRLYNYSGTGKPDPSMSTSYVNFLRRKCRWASDYVDLDATTPNKFDNAYYTNLPKKMGLLPSDSALYTDRRTAPIVKALAYQPSLFRLQFAVSMAKLGNVQVLNDLFEGEIRTNCSCRNY 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1606394 1610176 + CmoCh18G002430.1 Cmo18g00243 402016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00243 315 SUPERFAMILY Heme-dependent peroxidases 51 314 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo18g00243 315 Gene3D Peroxidase, domain 2 196 292 - -
Cmo18g00243 315 ProSitePatterns Peroxidases active site signature. 82 93 IPR019794 GO:0004601
Cmo18g00243 315 PANTHER PEROXIDASE 196 312 - -
Cmo18g00243 315 PANTHER PEROXIDASE 39 193 - -
Cmo18g00243 315 PANTHER PEROXIDASE 25-RELATED 196 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00243 315 PANTHER PEROXIDASE 25-RELATED 39 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00243 315 Gene3D - 55 192 - -
Cmo18g00243 315 CDD secretory_peroxidase 51 311 IPR033905 GO:0004601|GO:0042744
Cmo18g00243 315 PRINTS Haem peroxidase superfamily signature 233 248 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00243 315 PRINTS Haem peroxidase superfamily signature 82 96 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00243 315 PRINTS Plant peroxidase signature 84 104 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00243 315 PRINTS Plant peroxidase signature 153 163 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00243 315 PRINTS Plant peroxidase signature 134 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00243 315 PRINTS Plant peroxidase signature 172 187 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00243 315 PRINTS Plant peroxidase signature 60 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00243 315 ProSiteProfiles Plant heme peroxidase family profile. 50 314 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00243 315 Gene3D - 293 314 - -
Cmo18g00243 315 Pfam Peroxidase 68 188 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00243 K00430 E1.11.1.7; peroxidase [EC:1.11.1.7] - csv:101208042 468.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00243 Cmo-Chr18:1606394 Cmo03g01001 Cmo-Chr3:7539228 2.05E-63 dispersed
Cmo20g00315 Cmo-Chr20:1543724 Cmo18g00243 Cmo-Chr18:1606394 4.39E-07 dispersed
Cmo18g00243 Cmo-Chr18:1606394 Cmo02g00676 Cmo-Chr2:4288488 3.97E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g980 . . . . . . . . . Cmo18g00243 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002409 1 2 1 1 2 3 2 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 2 2 2 2 2 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00243 Cmo_Chr18 FPKM 0.779116 0.0 1.644818 1.751812 0.635607 0.0 0.761988 1.443904 1.020194 1.46788