Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00244 ATGACGAAACGTCGTCCCGCCACCGCCACCGCCACCACCACCGCCACTCTGGTCCTCGTCCTCGTCTTGTTCGAACGTTCGAAGCAGATGGCCTTAGCGGAAAATGGGGTCCCGGCGATCTTCGTGTTTGGAGACTCTCTTGTGGATGTTGGCAACAATAATTTTCTTCATTCAGCTGCTAGAGCTAACTTTTACCCTTATGGGATTGATTTTCGTGGTGGTCCGACCGGGAGATTCTCTAATGGAAGAACTGTTATAGATATGATTGTTGATTACCTTGGAATTCCGAACGCTCAAGAGTTTGCAAATCCCGATACTTCGGGAGATAGAATCCTTAAAGGTGTTAATTACGCTTCGGCGGCTGCTGGCATCCTCGATGAGACCGGTAGACACTATGGAGAGAGGTACAGTTTAAATCAGCAAGTGGTGAACTTCGAAAGCACTCGGAATGATTTAAGAAAAACAATGGACAATTGGAATTTGACTCGCTACTTATCGAGATCCATGGCTTTCATGGCGTTTGGAAGCAACGATTACATAAACAACTACCTGATGCCCAATCTCTATACTTCTAGATTCAGATACACCTCCAACCAATTCGCCGACCATCTTCTCAACAGCTATACTCGACAGCTTCTCGCACTACGAAGTGCAGGGCTAAGGAAGTTTGTGGTGGCCGGAATTGGGCCGTTGGGTTGCATTCCGAACCAACGGGCGACTGGCGTGGCGCTTCCAGGGCGGTGTGTGGATAACGTGAATGAGATGTTGGGAGATTTTAACGAAGGGTTGAGATCGCTAGTAACTCAGTTGAATAGCCAGTACCCGGATTCGTACTTCGTGTACACCAATATCTATGGCATTTTTGGTGACATCTTGAACAACCCAGATAACTACGGGTTTCGAGTGGTGGACACGGCATGCTGTGGAGTTGGGTTAAACAGAGGCCAAATAACGTGCTTACCACTCCAATTTCCATGCCTTAACCGAGATGAGTATGCGTTTTGGGATGCCTATCACCCAACGGAGGCTGCCTCCGTCGTGCTTGCCGACCGAGCTTTTAGAGGTCCACCCTCTGATTCCTACCCCATCAATATCCAACAGTTGGCTCTCCTATCCTTGTAA 1122 48.4 MTKRRPATATATTTATLVLVLVLFERSKQMALAENGVPAIFVFGDSLVDVGNNNFLHSAARANFYPYGIDFRGGPTGRFSNGRTVIDMIVDYLGIPNAQEFANPDTSGDRILKGVNYASAAAGILDETGRHYGERYSLNQQVVNFESTRNDLRKTMDNWNLTRYLSRSMAFMAFGSNDYINNYLMPNLYTSRFRYTSNQFADHLLNSYTRQLLALRSAGLRKFVVAGIGPLGCIPNQRATGVALPGRCVDNVNEMLGDFNEGLRSLVTQLNSQYPDSYFVYTNIYGIFGDILNNPDNYGFRVVDTACCGVGLNRGQITCLPLQFPCLNRDEYAFWDAYHPTEAASVVLADRAFRGPPSDSYPINIQQLALLSL 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1611522 1613282 - CmoCh18G002440.1 Cmo18g00244 402017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00244 373 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 16 370 - -
Cmo18g00244 373 Pfam GDSL-like Lipase/Acylhydrolase 40 350 IPR001087 GO:0016788
Cmo18g00244 373 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 16 370 - -
Cmo18g00244 373 SUPERFAMILY SGNH hydrolase 39 352 - -
Cmo18g00244 373 Gene3D SGNH hydrolase 25 355 IPR036514 -
Cmo18g00244 373 CDD SGNH_plant_lipase_like 38 356 IPR035669 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00244 - - - csv:116402503 619.002
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01300 Cmo-Chr9:11521885 Cmo18g00244 Cmo-Chr18:1611522 1.53E-118 dispersed
Cmo16g00933 Cmo-Chr16:5805041 Cmo18g00244 Cmo-Chr18:1611522 1.44E-68 dispersed
Cmo18g00244 Cmo-Chr18:1611522 Cmo20g01168 Cmo-Chr20:11493507 3.93E-85 dispersed
Cmo02g01215 Cmo-Chr2:7309118 Cmo18g00244 Cmo-Chr18:1611522 4.87E-39 transposed
Cmo03g00470 Cmo-Chr3:5152719 Cmo18g00244 Cmo-Chr18:1611522 4.34E-81 transposed
Cmo14g00841 Cmo-Chr14:4377722 Cmo18g00244 Cmo-Chr18:1611522 1.14E-90 transposed
Cmo10g00210 Cmo-Chr10:939620 Cmo18g00244 Cmo-Chr18:1611522 3.51E-74 transposed
Cmo13g00869 Cmo-Chr13:7920091 Cmo18g00244 Cmo-Chr18:1611522 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1002 . . . . . . . . . Cmo18g00244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006909 2 0 2 2 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00244 Cmo_Chr18 FPKM 13.020447 14.263148 13.743226 13.78994 13.784767 14.638549 15.26343 13.60756 12.204827 12.633599