Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00245 ATGATGGATTCAAGAATTTGGAGCAAACTACCGGAGAGGCTGCTGGATCGCGTCGTGGCGTTCCTCCCTCCACCGGCGTTCTTCCGAGCTCGTTGTGTCTGTAAAAGATGGTACGGCCTTCTCTTCTCCGCCACCTTCCTTGAATTGTATCTCCAACTTCCGCCGCACCGCCGCCATTGGTTCCTTTTCTTCAAGCTCAAGGCAAATAAGACCCAAATTTACAGAAATTGTGGTGGCCACTCCCGCCCCATCTACGAAGGCTACCTCTTCGATCCATACGACGTGGCGTGGCACCGCCTCTCCTTCGCTTTAATCCCGCCGGGATTCTCACCGGTGGCCGCCTCCGGCGGCCTAATCTGCTGGGCACCGGACGGCGGAGGTCCCAAAACCCTAATCCTCTCAAACCCAATTCTAGGGACACTCTCCCAACTTCCCCCAACGACAAGACCACGCCTTTTTCCGTCGATCGGCCTCGCCGTAACGCCATTCTCCGTCGACATAACCATCGCCGGCGATGACTTAATTTCCCCCTACGCCGTGAAAAACCTCACCGCCGAAACGTTCCATATTGACGGCGGCGGGTTCTACTCCATATGGGCCACGTCATCCACACTCCCCCGGCTATGCAGCTTGGAGTCCAGCAGAATGGTCCACGTGGACGGAAGATTCTACTGCATGAACTACAGCCCATTCAGCATCCTAGCGTACGACATGTCGGAGAACAAATGGTGGAAGATCCAAGCGCCGATGCGTCGGTTCCTACGGTCTCCAAATTTGTTGGAGAGCAGAGGAAAGTTGGTGTTAATGGCGGCGGTGGAGAAGAGCAAGCTGAATGTTCCAAAGAGCTTAAGGGTATGGGCCCTACAAGGGTGTGGGATGACGTGGATAGAAATGGAGAGAATGCCACATCAGCTCTACGTGGAGTTTGAGGGGATTGAGAAAGGGAGTGGATTTGATTGCGTGGCACATGGGGAATTCGTGGTGATTATGATAAAAGGGTGTTGGGATAAGGCTGCGCTTTTGTATGACGTGTGCAAGAGGACGTGGCAGTGGATTCCACCGTGTCCCTATATTGTTGGAAGTAATGATGATGACGGGGAAGACCAAGTGGTGTTGCATGGGTTTGCTTATGATCCGAGGTTGGCCACGCCGGTGACTGGACTCATTCATCAGCTCTCTTCTCTTCCATTTCACAATTTCAATGCTAATTAA 1212 53.05 MMDSRIWSKLPERLLDRVVAFLPPPAFFRARCVCKRWYGLLFSATFLELYLQLPPHRRHWFLFFKLKANKTQIYRNCGGHSRPIYEGYLFDPYDVAWHRLSFALIPPGFSPVAASGGLICWAPDGGGPKTLILSNPILGTLSQLPPTTRPRLFPSIGLAVTPFSVDITIAGDDLISPYAVKNLTAETFHIDGGGFYSIWATSSTLPRLCSLESSRMVHVDGRFYCMNYSPFSILAYDMSENKWWKIQAPMRRFLRSPNLLESRGKLVLMAAVEKSKLNVPKSLRVWALQGCGMTWIEMERMPHQLYVEFEGIEKGSGFDCVAHGEFVVIMIKGCWDKAALLYDVCKRTWQWIPPCPYIVGSNDDDGEDQVVLHGFAYDPRLATPVTGLIHQLSSLPFHNFNAN 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1617126 1618337 + CmoCh18G002450.1 Cmo18g00245 402018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00245 403 SUPERFAMILY Galactose oxidase, central domain 87 363 IPR011043 -
Cmo18g00245 403 Gene3D - 3 47 - -
Cmo18g00245 403 ProSiteProfiles F-box domain profile. 4 53 IPR001810 GO:0005515
Cmo18g00245 403 PANTHER F-BOX/KELCH-REPEAT PROTEIN 7 382 - -
Cmo18g00245 403 Gene3D - 62 383 IPR015915 GO:0005515
Cmo18g00245 403 SMART fbox_2 10 50 IPR001810 GO:0005515
Cmo18g00245 403 PANTHER PROTEIN UNUSUAL FLORAL ORGANS 7 382 - -
Cmo18g00245 403 Pfam F-box domain 7 38 IPR001810 GO:0005515
Cmo18g00245 403 SUPERFAMILY F-box domain 3 77 IPR036047 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00187 Cmo-Chr8:1087265 Cmo18g00245 Cmo-Chr18:1617126 8.48E-28 dispersed
Cmo09g00385 Cmo-Chr9:1680628 Cmo18g00245 Cmo-Chr18:1617126 6.96E-18 dispersed
Cmo15g00228 Cmo-Chr15:1119622 Cmo18g00245 Cmo-Chr18:1617126 1.62E-30 dispersed
Cmo14g01369 Cmo-Chr14:11316978 Cmo18g00245 Cmo-Chr18:1617126 3.76E-20 transposed
Cmo13g00871 Cmo-Chr13:7927967 Cmo18g00245 Cmo-Chr18:1617126 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00245 - - cmos:111456693 851.277