Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00245 ATGATGGATTCAAGAATTTGGAGCAAACTACCGGAGAGGCTGCTGGATCGCGTCGTGGCGTTCCTCCCTCCACCGGCGTTCTTCCGAGCTCGTTGTGTCTGTAAAAGATGGTACGGCCTTCTCTTCTCCGCCACCTTCCTTGAATTGTATCTCCAACTTCCGCCGCACCGCCGCCATTGGTTCCTTTTCTTCAAGCTCAAGGCAAATAAGACCCAAATTTACAGAAATTGTGGTGGCCACTCCCGCCCCATCTACGAAGGCTACCTCTTCGATCCATACGACGTGGCGTGGCACCGCCTCTCCTTCGCTTTAATCCCGCCGGGATTCTCACCGGTGGCCGCCTCCGGCGGCCTAATCTGCTGGGCACCGGACGGCGGAGGTCCCAAAACCCTAATCCTCTCAAACCCAATTCTAGGGACACTCTCCCAACTTCCCCCAACGACAAGACCACGCCTTTTTCCGTCGATCGGCCTCGCCGTAACGCCATTCTCCGTCGACATAACCATCGCCGGCGATGACTTAATTTCCCCCTACGCCGTGAAAAACCTCACCGCCGAAACGTTCCATATTGACGGCGGCGGGTTCTACTCCATATGGGCCACGTCATCCACACTCCCCCGGCTATGCAGCTTGGAGTCCAGCAGAATGGTCCACGTGGACGGAAGATTCTACTGCATGAACTACAGCCCATTCAGCATCCTAGCGTACGACATGTCGGAGAACAAATGGTGGAAGATCCAAGCGCCGATGCGTCGGTTCCTACGGTCTCCAAATTTGTTGGAGAGCAGAGGAAAGTTGGTGTTAATGGCGGCGGTGGAGAAGAGCAAGCTGAATGTTCCAAAGAGCTTAAGGGTATGGGCCCTACAAGGGTGTGGGATGACGTGGATAGAAATGGAGAGAATGCCACATCAGCTCTACGTGGAGTTTGAGGGGATTGAGAAAGGGAGTGGATTTGATTGCGTGGCACATGGGGAATTCGTGGTGATTATGATAAAAGGGTGTTGGGATAAGGCTGCGCTTTTGTATGACGTGTGCAAGAGGACGTGGCAGTGGATTCCACCGTGTCCCTATATTGTTGGAAGTAATGATGATGACGGGGAAGACCAAGTGGTGTTGCATGGGTTTGCTTATGATCCGAGGTTGGCCACGCCGGTGACTGGACTCATTCATCAGCTCTCTTCTCTTCCATTTCACAATTTCAATGCTAATTAA 1212 53.05 MMDSRIWSKLPERLLDRVVAFLPPPAFFRARCVCKRWYGLLFSATFLELYLQLPPHRRHWFLFFKLKANKTQIYRNCGGHSRPIYEGYLFDPYDVAWHRLSFALIPPGFSPVAASGGLICWAPDGGGPKTLILSNPILGTLSQLPPTTRPRLFPSIGLAVTPFSVDITIAGDDLISPYAVKNLTAETFHIDGGGFYSIWATSSTLPRLCSLESSRMVHVDGRFYCMNYSPFSILAYDMSENKWWKIQAPMRRFLRSPNLLESRGKLVLMAAVEKSKLNVPKSLRVWALQGCGMTWIEMERMPHQLYVEFEGIEKGSGFDCVAHGEFVVIMIKGCWDKAALLYDVCKRTWQWIPPCPYIVGSNDDDGEDQVVLHGFAYDPRLATPVTGLIHQLSSLPFHNFNAN 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1617126 1618337 + CmoCh18G002450.1 Cmo18g00245 402018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00245 403 SUPERFAMILY Galactose oxidase, central domain 87 363 IPR011043 -
Cmo18g00245 403 Gene3D - 3 47 - -
Cmo18g00245 403 ProSiteProfiles F-box domain profile. 4 53 IPR001810 GO:0005515
Cmo18g00245 403 PANTHER F-BOX/KELCH-REPEAT PROTEIN 7 382 - -
Cmo18g00245 403 Gene3D - 62 383 IPR015915 GO:0005515
Cmo18g00245 403 SMART fbox_2 10 50 IPR001810 GO:0005515
Cmo18g00245 403 PANTHER PROTEIN UNUSUAL FLORAL ORGANS 7 382 - -
Cmo18g00245 403 Pfam F-box domain 7 38 IPR001810 GO:0005515
Cmo18g00245 403 SUPERFAMILY F-box domain 3 77 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00245 - - - cmos:111456693 851.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00187 Cmo-Chr8:1087265 Cmo18g00245 Cmo-Chr18:1617126 8.48E-28 dispersed
Cmo09g00385 Cmo-Chr9:1680628 Cmo18g00245 Cmo-Chr18:1617126 6.96E-18 dispersed
Cmo15g00228 Cmo-Chr15:1119622 Cmo18g00245 Cmo-Chr18:1617126 1.62E-30 dispersed
Cmo14g01369 Cmo-Chr14:11316978 Cmo18g00245 Cmo-Chr18:1617126 3.76E-20 transposed
Cmo13g00871 Cmo-Chr13:7927967 Cmo18g00245 Cmo-Chr18:1617126 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g105 . . . . . . . . . Cmo18g00245 . . . . . Cpe09g00935 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009727 1 0 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00245 Cmo_Chr18 FPKM 0.0 0.0 2.284451 3.064607 1.947373 1.786309 2.07836 0.100142 0.0 0.154913