Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00246 ATGGCTCCGACGGAGTTGAAACCGCTTTTTTTGCAATTTCTTCTGCTTCTGATGTTGATTTGGGTGTCCAGAATAGGCGCCTCGGATACTATGTTCAACGAGTCAGGGCATTCGGTTGTTTCCAGTAATGAAAACCCAAAAGGTTGGTGCCCTCATGGTTGGTTTATTAGCCCAAACAAGACTAAGTGCTACGGTTTCATGTCGGTTCCTAAATCATGGAATGAATCAGAGAGCCAATGTAACGAGTATGGCGGGAACTTAGCAGCACTGATAACATATCAAGAGTTTAGCTTTGCGCAAAATCTGTGTAATGGAACTCTTGGTGGCTGTTGGGTTGGTGGCAGAGCGTTCAACTCCTCGAATGATTTTGTTTGGAAGTGGTCAGATAATGTTTCAAAATGGAACGATTCCATGTTTCCCAGCACAGCTTTGCAATCTAATTGCAAAAATGTCTCGTGCCACGCGAATGATTCAGTAGAAACATGTACTTTGATATCTGGTGGATTGGCAACACCGTTACTTAAGGATGAGAAATGCAACAGTTCTCACCCTTACATATGCATGATAGATCTAGATGGAAGATGCCATCGCATGCACTGCCACAAGGAGTATCTAGTCATACTAGCTGTTGTGAGTGGGTTGATAGTTTGCACGACGTTAGCTGTGGTGGTTTGGCTTCTTGCCTACAAGAGGAGCAAAAAGCGGAGAAGGTCTCGAAAGCCATCGAATACTGCAGCTTCTGCATTGGTACCACCTTCATGGAAGGTGTTTACCAAAGAAGAGCTAAGATCGATTACTAAAAACTTCAGTGAGGGAAACCGTCTTCTCGGAGACACGAAAACAGGTGGTACATACAGTGGCCTTTTACCTGATGGTTCAAGAGTTGCAATTAAAAGGTTAAAGAAGTCCAGCTTTCAGAGGAAAAAGGAGTTCCATTCTGAAATTGCAAGAGTTGCTAAACTTCGTCATCCGAATTTGGTTGCCCTGAAAGGATGCTGCTATGACCACGGTGACCGCTACATTGTTTATGAATTCATTGTTAATGGTCCCTTAGATAGATGGCTTTACCATGTCCCAAGAGGTGGTCGAAGCTTAGATTGGACCATGCGAATGAAAGTCGCCACGACTCTTGCCCACGGGATTGCGTTCCTACACGACAAGGTCAAGCCACACGTGGTACATCGTGATATCCGAGCCAGTAATGTACTTCTCGATGAAGATTTTGGCGCACATCTGATGGGAGTTGGCCTGTCGAAGTTGGTTGCATATGAAGTGATGCATGAGAGGACTGTGATGGCAGGGGGAACCTATGGTTACCTTGCTCCTGAATTTGTCTACAGAAATGAGCTAACGACAAAGAGCGATGTCTATAGTTTTGGGGTGCTGTTGCTTGAAATTGTGACGGGTCGAAGGCCTGCACAGGCAGTTGATTCTGTTGGTTGGCAGAGCATTTTCGAATGGGCAACGCCCCTCGTGCAGGCTCACCGTTACCTAGATCTATTGGATCCTCATATCACAGCCACATCTACTTCTGAAATTCCGGAGGCTGGTGTTGTTCAGAAGGTGGTGGATCTTGTGTATGCTTGCACACAGCACGTCCCATCCATGCGCCCTAGAATGTCGCATGTTGTTCATCAGTTGCAACAATTGGCACCCTCACCTCTCACTATGAAGTAA 1677 45.74 MAPTELKPLFLQFLLLLMLIWVSRIGASDTMFNESGHSVVSSNENPKGWCPHGWFISPNKTKCYGFMSVPKSWNESESQCNEYGGNLAALITYQEFSFAQNLCNGTLGGCWVGGRAFNSSNDFVWKWSDNVSKWNDSMFPSTALQSNCKNVSCHANDSVETCTLISGGLATPLLKDEKCNSSHPYICMIDLDGRCHRMHCHKEYLVILAVVSGLIVCTTLAVVVWLLAYKRSKKRRRSRKPSNTAASALVPPSWKVFTKEELRSITKNFSEGNRLLGDTKTGGTYSGLLPDGSRVAIKRLKKSSFQRKKEFHSEIARVAKLRHPNLVALKGCCYDHGDRYIVYEFIVNGPLDRWLYHVPRGGRSLDWTMRMKVATTLAHGIAFLHDKVKPHVVHRDIRASNVLLDEDFGAHLMGVGLSKLVAYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWATPLVQAHRYLDLLDPHITATSTSEIPEAGVVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPLTMK 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1619425 1622780 + CmoCh18G002460.1 Cmo18g00246 402019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00246 558 CDD CLECT 62 187 - -
Cmo18g00246 558 SUPERFAMILY C-type lectin-like 40 190 IPR016187 -
Cmo18g00246 558 Gene3D Transferase(Phosphotransferase) domain 1 346 554 - -
Cmo18g00246 558 Gene3D Phosphorylase Kinase; domain 1 228 345 - -
Cmo18g00246 558 SMART CLECT_2 50 188 IPR001304 -
Cmo18g00246 558 SMART tyrkin_6 273 547 IPR020635 GO:0004713|GO:0006468
Cmo18g00246 558 SUPERFAMILY Protein kinase-like (PK-like) 243 547 IPR011009 -
Cmo18g00246 558 Pfam Protein tyrosine and serine/threonine kinase 276 547 IPR001245 GO:0004672|GO:0006468
Cmo18g00246 558 Gene3D - 30 190 IPR016186 -
Cmo18g00246 558 PANTHER - 5 551 - -
Cmo18g00246 558 Pfam Lectin C-type domain 70 188 IPR001304 -
Cmo18g00246 558 ProSiteProfiles Protein kinase domain profile. 270 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00246 558 ProSitePatterns Tyrosine protein kinases specific active-site signature. 392 404 IPR008266 GO:0004672|GO:0006468
Cmo18g00246 558 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 551 - -
Cmo18g00246 558 ProSiteProfiles C-type lectin domain profile. 59 188 IPR001304 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00246 Cmo-Chr18:1619425 Cmo19g01087 Cmo-Chr19:9337712 9.50E-62 dispersed
Cmo13g00872 Cmo-Chr13:7931230 Cmo18g00246 Cmo-Chr18:1619425 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75042 PF07714 PK_Tyr_Ser-Thr 1.70E-39 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00246 - - csv:101218425 1022.31