Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00247 ATGGCCATTGCCTATGCTAACACCGATTCCATGGCAGCTTTTCTCATCAAGGATCATCATCATCATCATCACCAGCATTCTTCTCTCTCCTTCTTCTTCAGCTACCTGCTCTTTTTCCTTCTGTTTTCATCTCCTCCCACCGCTTACGCATTTACTGGAGATGTAGCCGAAGATTCAAAGAACAGAAGGGATGATTTGTTTGTGGAAATTCTTAAAGACGAAGCAGTAGGAAGATTGAACGAGCTAGGGAAGGTAAGTGATGCTGCTCGCTATCTTGAGAGGACGTTCTTGAGTCCAGCTTCTATCAAAGCAAGATTTCTTCTTAAAAAATGGATGGAGGATTCTGGATTAAGAACGTGGGTGGACTGTATGGGAAATCTACATGGTCGAGCTGAGGGAAGGAATGCAAGTGCTGAAGCTTTGCTGATTGGTTCTCACTTGGATACTGTTGTTGATGCTGGAAAATTTGATGGCGCATTAGGCATCATATCTGCTATCTCTGCTTTGAAAGTTTTCTATATGAGTGGGAAGTTAGAAGAATTAAAGAGGCCAATTGAGGTGATTGCCTTCAGTGATGAAGAGGGTGTGAGGTTTCAATCAACCTTCTTGGGAAGTGCTGCTATTGCTGGTATTTTACCAGTTTCGTCTTTGGAAATATCAGATAAAAGTGGTATGTCAATAAAAGATGTTATTACGGAGAGTGGAGTGGAGATAACAGAGGAGAACTTGTTGCAACTCAAGTATGACCGCAAGTCTGTATGGGGATATGTTGAGGTTCATATCGAACAAGGACCTGTACTTGAATGGACTGGTTTTCCTCTTGGAGTGGTTAGGGGCATTGCTGGGCAGTCACGACTAAAGGTTACAGTGAGAGGTTCTCAGGGGCATGCAGGAACAGTTCCAATGCCTTTGCGCCAGGATCCCATGGCAGCTTCAGCTGAATTGATTGTACAATTGGAAAAGCTCTGTAAGCAACCAGAGAGCTACTTATCTTTTGATGGTCATTGCAGTGATTTTACCTTGAAGTCACTTTCCACATCTCTTGTCTGTACGGTTGGAGAGATATCAACATGGCCCAGTGCAAGTAATGTCATTCCTGGCCAGGTGACCTTCACTGTGGATTTACGTACCATCGATGACATAGGACGAGAAGCTGTAATTTATGAATTCTCTAATCAGCATGATGCAAATGCTGTAATCAGTGATTCGGAGCTGAGCTCGCAGCTGAAATCTGCAGCTTCTGCGGCCCTCAAAAAAATGGTAGGCGACATTCAAGAGGAAGTACCTATATTAATGAGTGGAGCAGGGCATGATGCAATGGCTATGTCTTATTTGACAAAGGTGGGAATGTTGTTTGTCCGATGTCGTGGAGGCGTAAGTCACTCTCCTGCCGAGCATGTATTGGATGACGACATTTGGGCTGCAGGTTTAGCAGTCTTGGAATTTCTAGAAAACCATCTGTAA 1464 43.85 MAIAYANTDSMAAFLIKDHHHHHHQHSSLSFFFSYLLFFLLFSSPPTAYAFTGDVAEDSKNRRDDLFVEILKDEAVGRLNELGKVSDAARYLERTFLSPASIKARFLLKKWMEDSGLRTWVDCMGNLHGRAEGRNASAEALLIGSHLDTVVDAGKFDGALGIISAISALKVFYMSGKLEELKRPIEVIAFSDEEGVRFQSTFLGSAAIAGILPVSSLEISDKSGMSIKDVITESGVEITEENLLQLKYDRKSVWGYVEVHIEQGPVLEWTGFPLGVVRGIAGQSRLKVTVRGSQGHAGTVPMPLRQDPMAASAELIVQLEKLCKQPESYLSFDGHCSDFTLKSLSTSLVCTVGEISTWPSASNVIPGQVTFTVDLRTIDDIGREAVIYEFSNQHDANAVISDSELSSQLKSAASAALKKMVGDIQEEVPILMSGAGHDAMAMSYLTKVGMLFVRCRGGVSHSPAEHVLDDDIWAAGLAVLEFLENHL 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1621910 1626897 - CmoCh18G002470.1 Cmo18g00247 402020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00247 487 SUPERFAMILY Zn-dependent exopeptidases 73 486 - -
Cmo18g00247 487 Gene3D Zn peptidases 85 480 - -
Cmo18g00247 487 SUPERFAMILY Bacterial exopeptidase dimerisation domain 282 406 IPR036264 -
Cmo18g00247 487 TIGRFAM hydantase: amidase, hydantoinase/carbamoylase family 77 480 IPR010158 GO:0016813
Cmo18g00247 487 PANTHER ALLANTOATE DEIMINASE-RELATED 62 480 - -
Cmo18g00247 487 Pfam Peptidase family M20/M25/M40 142 484 IPR002933 GO:0016787
Cmo18g00247 487 Gene3D - 282 408 - -
Cmo18g00247 487 PANTHER ALLANTOATE DEIMINASE-RELATED 62 480 IPR010158 GO:0016813
Cmo18g00247 487 CDD M20_bAS 78 484 - -
Cmo18g00247 487 Pfam Peptidase dimerisation domain 282 391 IPR011650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00247 K02083 allC; allantoate deiminase [EC:3.5.3.9] - csv:101218785 839.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01351 Cmo-Chr6:10005728 Cmo18g00247 Cmo-Chr18:1621910 7.30E-51 transposed
Cmo13g00873 Cmo-Chr13:7934505 Cmo18g00247 Cmo-Chr18:1621910 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g112 . . . . . . . . . Cmo18g00247 . . . . . Cpe09g00933 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009494 1 0 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 2 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00247 Cmo_Chr18 FPKM 2.231822 2.206649 0.609475 0.746715 3.021587 3.361478 3.274099 3.263957 3.301998 3.223733