Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00247 ATGGCCATTGCCTATGCTAACACCGATTCCATGGCAGCTTTTCTCATCAAGGATCATCATCATCATCATCACCAGCATTCTTCTCTCTCCTTCTTCTTCAGCTACCTGCTCTTTTTCCTTCTGTTTTCATCTCCTCCCACCGCTTACGCATTTACTGGAGATGTAGCCGAAGATTCAAAGAACAGAAGGGATGATTTGTTTGTGGAAATTCTTAAAGACGAAGCAGTAGGAAGATTGAACGAGCTAGGGAAGGTAAGTGATGCTGCTCGCTATCTTGAGAGGACGTTCTTGAGTCCAGCTTCTATCAAAGCAAGATTTCTTCTTAAAAAATGGATGGAGGATTCTGGATTAAGAACGTGGGTGGACTGTATGGGAAATCTACATGGTCGAGCTGAGGGAAGGAATGCAAGTGCTGAAGCTTTGCTGATTGGTTCTCACTTGGATACTGTTGTTGATGCTGGAAAATTTGATGGCGCATTAGGCATCATATCTGCTATCTCTGCTTTGAAAGTTTTCTATATGAGTGGGAAGTTAGAAGAATTAAAGAGGCCAATTGAGGTGATTGCCTTCAGTGATGAAGAGGGTGTGAGGTTTCAATCAACCTTCTTGGGAAGTGCTGCTATTGCTGGTATTTTACCAGTTTCGTCTTTGGAAATATCAGATAAAAGTGGTATGTCAATAAAAGATGTTATTACGGAGAGTGGAGTGGAGATAACAGAGGAGAACTTGTTGCAACTCAAGTATGACCGCAAGTCTGTATGGGGATATGTTGAGGTTCATATCGAACAAGGACCTGTACTTGAATGGACTGGTTTTCCTCTTGGAGTGGTTAGGGGCATTGCTGGGCAGTCACGACTAAAGGTTACAGTGAGAGGTTCTCAGGGGCATGCAGGAACAGTTCCAATGCCTTTGCGCCAGGATCCCATGGCAGCTTCAGCTGAATTGATTGTACAATTGGAAAAGCTCTGTAAGCAACCAGAGAGCTACTTATCTTTTGATGGTCATTGCAGTGATTTTACCTTGAAGTCACTTTCCACATCTCTTGTCTGTACGGTTGGAGAGATATCAACATGGCCCAGTGCAAGTAATGTCATTCCTGGCCAGGTGACCTTCACTGTGGATTTACGTACCATCGATGACATAGGACGAGAAGCTGTAATTTATGAATTCTCTAATCAGCATGATGCAAATGCTGTAATCAGTGATTCGGAGCTGAGCTCGCAGCTGAAATCTGCAGCTTCTGCGGCCCTCAAAAAAATGGTAGGCGACATTCAAGAGGAAGTACCTATATTAATGAGTGGAGCAGGGCATGATGCAATGGCTATGTCTTATTTGACAAAGGTGGGAATGTTGTTTGTCCGATGTCGTGGAGGCGTAAGTCACTCTCCTGCCGAGCATGTATTGGATGACGACATTTGGGCTGCAGGTTTAGCAGTCTTGGAATTTCTAGAAAACCATCTGTAA 1464 43.85 MAIAYANTDSMAAFLIKDHHHHHHQHSSLSFFFSYLLFFLLFSSPPTAYAFTGDVAEDSKNRRDDLFVEILKDEAVGRLNELGKVSDAARYLERTFLSPASIKARFLLKKWMEDSGLRTWVDCMGNLHGRAEGRNASAEALLIGSHLDTVVDAGKFDGALGIISAISALKVFYMSGKLEELKRPIEVIAFSDEEGVRFQSTFLGSAAIAGILPVSSLEISDKSGMSIKDVITESGVEITEENLLQLKYDRKSVWGYVEVHIEQGPVLEWTGFPLGVVRGIAGQSRLKVTVRGSQGHAGTVPMPLRQDPMAASAELIVQLEKLCKQPESYLSFDGHCSDFTLKSLSTSLVCTVGEISTWPSASNVIPGQVTFTVDLRTIDDIGREAVIYEFSNQHDANAVISDSELSSQLKSAASAALKKMVGDIQEEVPILMSGAGHDAMAMSYLTKVGMLFVRCRGGVSHSPAEHVLDDDIWAAGLAVLEFLENHL 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1621910 1626897 - CmoCh18G002470.1 Cmo18g00247 402020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00247 487 SUPERFAMILY Zn-dependent exopeptidases 73 486 - -
Cmo18g00247 487 Gene3D Zn peptidases 85 480 - -
Cmo18g00247 487 SUPERFAMILY Bacterial exopeptidase dimerisation domain 282 406 IPR036264 -
Cmo18g00247 487 TIGRFAM hydantase: amidase, hydantoinase/carbamoylase family 77 480 IPR010158 GO:0016813
Cmo18g00247 487 PANTHER ALLANTOATE DEIMINASE-RELATED 62 480 - -
Cmo18g00247 487 Pfam Peptidase family M20/M25/M40 142 484 IPR002933 GO:0016787
Cmo18g00247 487 Gene3D - 282 408 - -
Cmo18g00247 487 PANTHER ALLANTOATE DEIMINASE-RELATED 62 480 IPR010158 GO:0016813
Cmo18g00247 487 CDD M20_bAS 78 484 - -
Cmo18g00247 487 Pfam Peptidase dimerisation domain 282 391 IPR011650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01351 Cmo-Chr6:10005728 Cmo18g00247 Cmo-Chr18:1621910 7.30E-51 transposed
Cmo13g00873 Cmo-Chr13:7934505 Cmo18g00247 Cmo-Chr18:1621910 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00247 K02083 - csv:101218785 839.721