Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00248 ATGCACTTAGTTTTAAGAACAAGGCATCTCCTACCCGGTGTGTTTACTAACATCGTTCGTTCCCCTGTGGCTGCCTTCAACTTAAATGGATTACATAGAAATTACGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAGGAAGTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCAGCAAATTTCGATCCAACACAGCATCGCAGTCCTCCAACTGATCGTGTTTTTAGGCTTGTGGATGAAATATCAGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTGGTTGGAGTTATGAAACCAGGAGCTGCCGGATTAGCTGGTATGGGTATGAAGGCATCAGCAGCAGCTGCCAAGGAGGAGAAGAAGCCGGAAAAGACTGTTTATGAATTGAAATTAGAGTCTTACGAAGCAGCTGCAAAGATTAAAATTATAAAGGAGGTAAGAAGTTTCACGGATTTAGGGCTTAAAGAAGCAAAGGATCTAGTGGAGAAAACGCCATCAGTGTTGAAGAAGGGATTGTCAAAGGAAGAGGGTGAACAATTGATTGAAAAGATGAAGGCACTCGGTGCAAAAGTCATCTTGGAATGA 636 42.77 MHLVLRTRHLLPGVFTNIVRSPVAAFNLNGLHRNYAQPARIEEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1644339 1644974 + CmoCh18G002480.1 Cmo18g00248 402021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00248 211 Hamap 50S ribosomal protein L7/L12 [rplL]. 74 211 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cmo18g00248 211 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 79 120 IPR036235 GO:0003735|GO:0005840|GO:0006412
Cmo18g00248 211 PANTHER F20P5.9 PROTEIN 19 211 IPR015608 -
Cmo18g00248 211 Pfam Ribosomal protein L7/L12 dimerisation domain 80 120 IPR008932 GO:0003735|GO:0005840|GO:0006412
Cmo18g00248 211 SUPERFAMILY ClpS-like 144 210 IPR014719 -
Cmo18g00248 211 CDD Ribosomal_L7_L12 76 210 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cmo18g00248 211 Gene3D - 140 210 IPR014719 -
Cmo18g00248 211 Pfam Ribosomal protein L7/L12 C-terminal domain 145 210 IPR013823 GO:0003735|GO:0006412
Cmo18g00248 211 PANTHER 39S RIBOSOMAL PROTEIN L12 19 211 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cmo18g00248 211 Gene3D Single helix bin 78 139 IPR036235 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00474 Cmo-Chr1:2264307 Cmo18g00248 Cmo-Chr18:1644339 1.72E-31 dispersed
Cmo07g00656 Cmo-Chr7:2952356 Cmo18g00248 Cmo-Chr18:1644339 4.56E-33 dispersed
Cmo11g01686 Cmo-Chr11:11959009 Cmo18g00248 Cmo-Chr18:1644339 4.94E-14 dispersed
Cmo14g00671 Cmo-Chr14:3409499 Cmo18g00248 Cmo-Chr18:1644339 2.93E-14 dispersed
Cmo13g00874 Cmo-Chr13:7951170 Cmo18g00248 Cmo-Chr18:1644339 1.35E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00248 K02935 - csv:101218390 315.079