Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00248 ATGCACTTAGTTTTAAGAACAAGGCATCTCCTACCCGGTGTGTTTACTAACATCGTTCGTTCCCCTGTGGCTGCCTTCAACTTAAATGGATTACATAGAAATTACGCTCAACCTGCTCGGATAGAGGAGGAAGAGGAGGAAGTGGAAATTGACCAGAGAAGGCTTCCAGCTGATTACGATCCAGCAAATTTCGATCCAACACAGCATCGCAGTCCTCCAACTGATCGTGTTTTTAGGCTTGTGGATGAAATATCAGGACTCACATTAGTTGAAGTTGCTGAATTATCTTCCATTTTGAGGAAAAAATTAGGAATGACAGACATGCCAGTGGTTGGAGTTATGAAACCAGGAGCTGCCGGATTAGCTGGTATGGGTATGAAGGCATCAGCAGCAGCTGCCAAGGAGGAGAAGAAGCCGGAAAAGACTGTTTATGAATTGAAATTAGAGTCTTACGAAGCAGCTGCAAAGATTAAAATTATAAAGGAGGTAAGAAGTTTCACGGATTTAGGGCTTAAAGAAGCAAAGGATCTAGTGGAGAAAACGCCATCAGTGTTGAAGAAGGGATTGTCAAAGGAAGAGGGTGAACAATTGATTGAAAAGATGAAGGCACTCGGTGCAAAAGTCATCTTGGAATGA 636 42.77 MHLVLRTRHLLPGVFTNIVRSPVAAFNLNGLHRNYAQPARIEEEEEEVEIDQRRLPADYDPANFDPTQHRSPPTDRVFRLVDEISGLTLVEVAELSSILRKKLGMTDMPVVGVMKPGAAGLAGMGMKASAAAAKEEKKPEKTVYELKLESYEAAAKIKIIKEVRSFTDLGLKEAKDLVEKTPSVLKKGLSKEEGEQLIEKMKALGAKVILE 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1644339 1644974 + CmoCh18G002480.1 Cmo18g00248 402021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00248 211 Hamap 50S ribosomal protein L7/L12 [rplL]. 74 211 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cmo18g00248 211 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 79 120 IPR036235 GO:0003735|GO:0005840|GO:0006412
Cmo18g00248 211 PANTHER F20P5.9 PROTEIN 19 211 IPR015608 -
Cmo18g00248 211 Pfam Ribosomal protein L7/L12 dimerisation domain 80 120 IPR008932 GO:0003735|GO:0005840|GO:0006412
Cmo18g00248 211 SUPERFAMILY ClpS-like 144 210 IPR014719 -
Cmo18g00248 211 CDD Ribosomal_L7_L12 76 210 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cmo18g00248 211 Gene3D - 140 210 IPR014719 -
Cmo18g00248 211 Pfam Ribosomal protein L7/L12 C-terminal domain 145 210 IPR013823 GO:0003735|GO:0006412
Cmo18g00248 211 PANTHER 39S RIBOSOMAL PROTEIN L12 19 211 IPR000206 GO:0003735|GO:0005840|GO:0006412
Cmo18g00248 211 Gene3D Single helix bin 78 139 IPR036235 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00248 K02935 RP-L7, MRPL12, rplL; large subunit ribosomal protein L7/L12 - csv:101218390 315.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00474 Cmo-Chr1:2264307 Cmo18g00248 Cmo-Chr18:1644339 1.72E-31 dispersed
Cmo07g00656 Cmo-Chr7:2952356 Cmo18g00248 Cmo-Chr18:1644339 4.56E-33 dispersed
Cmo11g01686 Cmo-Chr11:11959009 Cmo18g00248 Cmo-Chr18:1644339 4.94E-14 dispersed
Cmo14g00671 Cmo-Chr14:3409499 Cmo18g00248 Cmo-Chr18:1644339 2.93E-14 dispersed
Cmo13g00874 Cmo-Chr13:7951170 Cmo18g00248 Cmo-Chr18:1644339 1.35E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g128 . . . . . . . . . Cmo18g00248 . . . . . Cpe09g00931 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007162 1 0 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 3 1 2 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00248 Cmo_Chr18 FPKM 27.478333 29.410826 31.869694 32.931499 34.503769 35.684292 34.42033 33.949345 33.319244 34.129578