Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00249 ATGTTCAGCCCTGTGACTGCTCGTTCTCCTGCTACGCCTATCACTCCTATTTCATTTGGAGAACCTCGTGCGCGGTCCTTCCTTAAGGAAGCCACTCCTTCGCCTCTTCTTTCTTTATTCACCCGTGCCTCCCTCCACGCCCACTCTGTGCCACGACCGTGCTCTGCTCTCAAAGCCATGGCTGATGGTGAAGCCGTCACCCTTTCTACAAAGATCACCGCTTCATCTCCTTCTGTTTCAGGAAAGAAGCTAGCTCTGATATCCTTGTCAGACAAGAAAAATCTTGCATTTCTAGGAAATGGGCTTCAAGAATTAGGCTACACGATTGTTTCAACTGGAGGGACTGCATCTACATTGGAAACTTCTGGGGTAAGCGTTACTAAGGTGGAGGAGCTGACAAGTTTCCCTGAAATGCTTGATGGTCGTGTAAAAACTTTGCATCCTTCTATACATGGGGGTATACTTGCTAGAAGAGACCAAAAGCATCATATGGACGCCCTTGATAAACATGGAATTGGCACATTTGATGTTGTCGTGGTAAACTTGTACCCGTTTTACGATAAAGTCACCTCATCTCAAAAAATAGACTTTGAAGATGGAATCGAGAACATTGATATTGGTGGCCCGGCCATGATCAGAGCTGCTGCAAAGAACCACAAGGATGTCTTAGTGGTCGTTGATACCGAAGACTATCCTGCACTGCTTGAGTTCTTGAAAGGAAATGAGGATGATCAACAATTTCGTCGAAAGCTTGCTTGGAAGGCATTTCAACATGTAGCTTCTTACGATTCTGCTGTCTCAGAATGGCTGTGGAAGCAGACTGTTGGAGATAAATTTCCTCCCAGCTTAACCGTGCCGCTTTCCCTCAAAAGTTCTCTTCGCTATGGCGAAAATCCTCATCAGAAGGCGGCCTTTTATGTTGATAAGAGTATCTCTGAAGTCAATACAGGTGGTATTGCAACAGCCATCCAACACCATGGAAAGGAGATGTCTTATAACAACTACTTAGATGCGGATGCAGCTTGGAATTGTGTGTCAGAGTTTAGGAATCCTACTTGTGTAGTTGTGAAACACACAAATCCATGTGGTGTAGCTTCACGTGATGATATTCTGGAAGCATATAGACTAGCTGTGAAGGCTGACCCCGTGAGTGCATTTGGTGGCATTGTAGCCTTCAACGTAGAAGTTGATGAGGTTCTTGCAAGGGAAATTCGGGAGTTCAGAAGCCCTACAGATGGTGAAACACGGATGTTTTATGAGATTGTTGTTGCACCCAAGTACACAAAGAAGGGGCTTGAGATCTTGCGTGGGAAATCAAAGACTCTGCGAATTCTTGAGGCAAACAAAAATGAGAAAGGAAAACTCTCACTCAGGCAAGTTGGTGGGGGTTGGTTAGCACAAGATTCTGACGACTTGGTTCCCCAAGATATACAATTTAACGTAGTTTCTGGAAAGGCCCCTCAAGAGAGCGAGCTTCAAGATGCAGAGTTTGCATGGTTGTGCGTCAAGCATGTCAAGAGCAATGCCATTGTGATAGCAAAGAATAACTGTATGTTGGGTATGGGAAGCGGGCAACCAAATCGCCTCGAAAGTTTGAGGATAGCCTTGAGGAAAGCTGGGGACGAGGTCAAAGGAGCTGCTTTGGCTAGTGACGCTTTCTTCCCATTTGCTTGGAATGATGCAGTGGAAGAAGCATGCCAGAGTGGAGTAGGTGTTATTGCAGAGCCCGGGGGCAGCATTCGAGATCCTGATGCTATCGACTGCTGCAACAAGTATGGCGTGTCCCTCGTCTTCACCAACGTGAGGCATTTCAGGCATTGA 1821 46.18 MFSPVTARSPATPITPISFGEPRARSFLKEATPSPLLSLFTRASLHAHSVPRPCSALKAMADGEAVTLSTKITASSPSVSGKKLALISLSDKKNLAFLGNGLQELGYTIVSTGGTASTLETSGVSVTKVEELTSFPEMLDGRVKTLHPSIHGGILARRDQKHHMDALDKHGIGTFDVVVVNLYPFYDKVTSSQKIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDTEDYPALLEFLKGNEDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQTVGDKFPPSLTVPLSLKSSLRYGENPHQKAAFYVDKSISEVNTGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFRNPTCVVVKHTNPCGVASRDDILEAYRLAVKADPVSAFGGIVAFNVEVDEVLAREIREFRSPTDGETRMFYEIVVAPKYTKKGLEILRGKSKTLRILEANKNEKGKLSLRQVGGGWLAQDSDDLVPQDIQFNVVSGKAPQESELQDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRLESLRIALRKAGDEVKGAALASDAFFPFAWNDAVEEACQSGVGVIAEPGGSIRDPDAIDCCNKYGVSLVFTNVRHFRH 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1646238 1653238 - CmoCh18G002490.1 Cmo18g00249 402022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00249 606 Pfam AICARFT/IMPCHase bienzyme 215 538 IPR002695 GO:0003937|GO:0004643|GO:0006164
Cmo18g00249 606 Hamap Bifunctional purine biosynthesis protein PurH [purH]. 82 606 IPR002695 GO:0003937|GO:0004643|GO:0006164
Cmo18g00249 606 PANTHER BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH 56 606 IPR002695 GO:0003937|GO:0004643|GO:0006164
Cmo18g00249 606 Gene3D - 474 606 IPR024051 -
Cmo18g00249 606 Pfam MGS-like domain 99 209 IPR011607 -
Cmo18g00249 606 TIGRFAM purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 83 606 IPR002695 GO:0003937|GO:0004643|GO:0006164
Cmo18g00249 606 SUPERFAMILY Cytidine deaminase-like 290 606 IPR016193 GO:0003824
Cmo18g00249 606 CDD IMPCH 83 270 - -
Cmo18g00249 606 PANTHER AICARFT/IMPCHASE BIENZYME FAMILY PROTEIN 56 606 - -
Cmo18g00249 606 PIRSF PurH 76 606 IPR002695 GO:0003937|GO:0004643|GO:0006164
Cmo18g00249 606 Gene3D - 287 454 IPR024051 -
Cmo18g00249 606 SMART aicarft_impchas 215 539 IPR002695 GO:0003937|GO:0004643|GO:0006164
Cmo18g00249 606 SUPERFAMILY Methylglyoxal synthase-like 83 273 IPR036914 -
Cmo18g00249 606 ProSiteProfiles MGS-like domain profile. 77 226 IPR011607 -
Cmo18g00249 606 SMART MGS_2a 94 210 IPR011607 -
Cmo18g00249 606 Gene3D - 73 277 IPR036914 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00249 K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] - csv:101206006 1108.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00875 Cmo-Chr13:7951957 Cmo18g00249 Cmo-Chr18:1646238 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g129 . . . . . . . . . Cmo18g00249 . . . . . Cpe09g00930 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006302 3 0 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00249 Cmo_Chr18 FPKM 28.777399 31.685917 41.742153 40.183586 26.487936 24.31171 30.386623 46.535114 47.774311 57.616432