Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00250 ATGGAAAGAAATGTGAAAAGAGGTACCATAGATCAACATAGCAATTATGAACAAGTTCGACATACTAATTTGGAAGCAAGAAATCAGGGACTTGGGTCGACAATTCAAAGATCTTTCCACGATCCATCAAGCAACATCAGCTCCAACATTCGACCCCCTGAATATAATATGCCAGTTGGAGCTAGTCCTGTCCACAACTACTCCATTCAAACTGGCGAGGAATTTGCACTTGAATTTATGCGGGAAAGGGTGAATGCCAAGCATCAATTTATTCCCACCAATAGTCCTGACCCAGGTGTTACAACTGGGTACATGGATTTAAAAGGCATTGTAGGACTTCCCCATCCAAGTTCCGAGAGTGGATCTAGTATTCCCATGCTCAACCCTGTAGAAAAAGATCATGTTCAACATTTTGAAAGAGGGGGCTTTTCACATGAAGAAAAGAGTATATATAATTCAAGGAGGTTTGTCCCAAGAGCCTCATCAAGAAATGATGTCATTCCACTTCATGGTTCTACATCTTCAGGAGCATCTGATAGCTCATCAAGAAAGGTGAAATTCATGTGCAGTTTTGGTGGTAAAGTCATGCCTCGCCCTAGTGATGGAAAACTTAGGTATGTTGGAGGGGAAACACGTATTATCCGTATAACCAAGGATATTTCTTGGTTGAATCTGCTGCAGAAAACATCAACAATTTACGATCAAGTTCATACTATTAAATATCAGTTACCTGGTGAGGATCTTGATGCATTGGTTTCTGTATCTTGTGATGAGGACTTGCAAAACATGATGGAGGAATGTAATGTAACAGAATATGGGGGCTCAACAAAGCCAAGAATGTTCTTGTTTTCTATTTCTGATTTGGAGGATGCTCAAATTGGTGTCAGAAGTGCAGAGGGTGATACAGAGTTTGAATATGTAGTAGCTGTAAATGGTATGGACCTCAGTTCAAGAAGGAACTCCACGCCGTTGGCCAATACTTCAGGAAACAATTTAGATGAGTTGCTTGCCCTTAACGTTGGATCAGAGAGTGGTCAAGTTGCTCCAGAATTGTCTGACAACATCAAATCATCTCTGACCATTTCTGCACCTTCATTTTCTCCGTCCTCTCAAACCAGTTGGACCAATTCATCTAGTGGTTTCAAGCCCAATTTGCAGCAATTGTCAGGACAAAAGTTGCAGCAAGGTGATTTTGGGCCTCCCCAACTCTCTTCTTTCCGCCCCATGCAAAGTTTATCTGAAAATGTTGGAAAGACTTCAATTCCTTCATCCATTCAGGCACAACGTGAGTATGTTCTTATTAACAATGCGGCACCTGTAGAGAATATATCTTCAATTCCCAGCAAAGGACATGTGAATCAACAGGGTGGCTTGGCTACAGACAATCCGGTCGGTAGTTTTCACACACAAGATTCAGATGCGTCGTTAAAGGAGGGTAAAATTACAGAGATTCCAACTTTGAAGCTGAATGAACCTGATAAAATTCAATCGTTGGAAAAGGAGGCATCATTTAAGGATGCACAAATTAAAAGGCAAGGCTCTCTCCATAAGATCGATGAAACTAATGAAAGCGAAAATTTTGAACATGAATACTTGGTTTCATCAAACCTAAATGATGCTTCTGTTTTGAGCTATAACTCAAAAGGAGTGCAGGTAATTAATTTAGACACAGATGTAGGATCAAGTTTCCCGCTTTCAAAAAGCAACAAGAAGCATCAAGATCCTGCTCAAGAATCAGTACCCCTAGAAGTGAGTAATGAAGGAAACAATAGAACTGAAGGTGATAAATTTTCATCTGATGGACTTCCAACTATTGGTTTTGGTGCCTCTGAGGCTGATGAAACAGGGTTTAGCTACCATGAACCCATTTTACCTCCACGTGTTTTTCACTCTGAAAGGATTCCAAGGGAGCAGGCTGAATTGAACCGTTTATCCAAATCTGATGATTCCTTTGGCTCTCAGTTTCTTAGAACTCAGGATAACTCCAATTTTTCTCAGACAATTATTGAATCAGCTGAAACATTGCTGGATGGGAATGCGACTCTGAAGCCTGAGCAATCTGTTTCATCTTCAAATGTTCCACGTGGAAATAGTCATGCTGTAGAAGATGGATTGGAGGCATTTGAAAAGTACAAAACATTAGCAGATACCAGTAATAAAATGATGAATATTTCAGGTGAGCATGATGGGTCTGAGGTCAGTGATATGTCCAATATTAGAAGCCCTTCTGCCAATAGGAAGGAAGCAGGAGGTTTGGCTCGTCTTAGGGCAAGTGAAGAAGTTTCTGACAAGTGTAAGGAGGAATCTCTTATGGGACCCCTGGAATCAGGCTGGATTGACGGAAGTACACATAAGAACCAAGGAAATGAAACTCAAGAGCAAACAGAGCCTTCATCATTGGCAGAGAATCCTGGTAAAACTGTTACTGAAGTAGAATCTGGAGTTGGTATTAACACTCCAGAGCATGGGGACATTCTTATTGATATTAATGACCGCTTTCCACGTGATTTCCTTTCTGATATATTCTCAAAGGCCAGAAACTTTGAAAGCATTTCTGGCATCAATCCATTGCATGCTAATGGGGCTGGCTTGAGCTTGAACGTGGAGAATCATGAGCCTAAGCGTTGGTCATACTTTAGAAACTTGGCTCAGGAGGAGTTTGTTGGAAGGGATGCTTCTCTTATGGATGATGACCACCTGGGCTTCTCTTCCTCACTTGCAAATTCAGACGTAGGTGCGATTTATCACAGAGATTCTCAAATCAATTTTGGTGACAACATTCAGCAGGAATCCTGTCTGCTCACTGGACCCAGCTCTACAAATCCATATACAGATTATGTTTCTTCAAAGCTTAAGGGCGATGACAGCATACAGTTGGATGATCCTAGCGCTAAAGCCCAACACACTAAAGGCCAACATGCTGAGAATGATGCAAAATTGGATATCCAAGATATTGGTGTACCTTTGGCTGATATTTATCTTGAAGAATTTGATATCAGTACGTTGCAGATAATTAACAATGAAGATCTTGAAGAGCAACGAGAACTGGGTTCTGGCACATTTGGTACAGTGTATCATGGGAAGTGGCGAGGATCAGATGTAGCAATTAAACGGATAAAAAAAAGTTGTTTCACCTGTAGGTCATCAGAGCAAGAAAGATTGACTGTAGAGTTTTGGCGTGAAGCTGAGATTCTTTCAAAGCTTCATCATCCAAATGTGGTGGCCTTTTATGGTGTGGTGCAGGATGGGCCAGGTGGGACGTTGGCCACAGTGACTGAGTTCATGGTCAATGGCTCCTTACGGAATGTTTTACTTAGCAAAGACCGGTACCTGGATCGACGCAAGAGGCTTATTATTGCAATGGATGCAGCATTTGGAATGGAATATCTGCATTCAAAGAATATTGTGCACTTTGATTTAAAATGCGACAACTTGCTTGTCAACTTGAAAGACCCTTTACGGCCAATTTGCAAGGTTGGAGATTTTGGCTTGTCAAAAATAAAAAGAAACACATTAGTTACTGGCGGTGTCAGAGGGACCCTTCCATGGATGGCTCCTGAACTACTTAACGGTAGCAGCAGCAAGGTTTCTGAAAAGGTTGACGTATTCTCATTTGGCATTGTACTATGGGAGATCCTCACTGGCGAGGAGCCATATGCAAATATGCACTATGGAGCAATCATAGGAGGCATAGTGAACAACACATTGAGACCACCGGTACCAAACTTCTGTGACCCCGACTGGAGATTGCTGATGGAACAGTGTTGGTCGCCTGACCCGGTAGCCCGGCCATCTTTCACAGACATAGCGAGGCGATTGCGTGTGATGTCTACGGCTACCCAGACAAAAGCACCACACGGTCATCAACCACAGAATCAGGCACCCAAGTAA 3891 42.1 MERNVKRGTIDQHSNYEQVRHTNLEARNQGLGSTIQRSFHDPSSNISSNIRPPEYNMPVGASPVHNYSIQTGEEFALEFMRERVNAKHQFIPTNSPDPGVTTGYMDLKGIVGLPHPSSESGSSIPMLNPVEKDHVQHFERGGFSHEEKSIYNSRRFVPRASSRNDVIPLHGSTSSGASDSSSRKVKFMCSFGGKVMPRPSDGKLRYVGGETRIIRITKDISWLNLLQKTSTIYDQVHTIKYQLPGEDLDALVSVSCDEDLQNMMEECNVTEYGGSTKPRMFLFSISDLEDAQIGVRSAEGDTEFEYVVAVNGMDLSSRRNSTPLANTSGNNLDELLALNVGSESGQVAPELSDNIKSSLTISAPSFSPSSQTSWTNSSSGFKPNLQQLSGQKLQQGDFGPPQLSSFRPMQSLSENVGKTSIPSSIQAQREYVLINNAAPVENISSIPSKGHVNQQGGLATDNPVGSFHTQDSDASLKEGKITEIPTLKLNEPDKIQSLEKEASFKDAQIKRQGSLHKIDETNESENFEHEYLVSSNLNDASVLSYNSKGVQVINLDTDVGSSFPLSKSNKKHQDPAQESVPLEVSNEGNNRTEGDKFSSDGLPTIGFGASEADETGFSYHEPILPPRVFHSERIPREQAELNRLSKSDDSFGSQFLRTQDNSNFSQTIIESAETLLDGNATLKPEQSVSSSNVPRGNSHAVEDGLEAFEKYKTLADTSNKMMNISGEHDGSEVSDMSNIRSPSANRKEAGGLARLRASEEVSDKCKEESLMGPLESGWIDGSTHKNQGNETQEQTEPSSLAENPGKTVTEVESGVGINTPEHGDILIDINDRFPRDFLSDIFSKARNFESISGINPLHANGAGLSLNVENHEPKRWSYFRNLAQEEFVGRDASLMDDDHLGFSSSLANSDVGAIYHRDSQINFGDNIQQESCLLTGPSSTNPYTDYVSSKLKGDDSIQLDDPSAKAQHTKGQHAENDAKLDIQDIGVPLADIYLEEFDISTLQIINNEDLEEQRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFTCRSSEQERLTVEFWREAEILSKLHHPNVVAFYGVVQDGPGGTLATVTEFMVNGSLRNVLLSKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPPVPNFCDPDWRLLMEQCWSPDPVARPSFTDIARRLRVMSTATQTKAPHGHQPQNQAPK 1296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1655442 1663866 + CmoCh18G002500.1 Cmo18g00250 402023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00250 1296 SMART serkin_6 1010 1276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00250 1296 ProSiteProfiles Protein kinase domain profile. 1010 1275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00250 1296 CDD PB1_UP2 188 283 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 34 52 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 366 385 - -
Cmo18g00250 1296 PANTHER SERINE-THREONINE PROTEIN KINASE 98 1284 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 780 805 - -
Cmo18g00250 1296 Pfam PB1 domain 201 283 IPR000270 GO:0005515
Cmo18g00250 1296 ProSitePatterns Protein kinases ATP-binding region signature. 1016 1041 IPR017441 GO:0005524
Cmo18g00250 1296 Gene3D Phosphorylase Kinase; domain 1 1003 1097 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 564 602 - -
Cmo18g00250 1296 PRINTS Tyrosine kinase catalytic domain signature 1092 1105 IPR001245 GO:0004672|GO:0006468
Cmo18g00250 1296 PRINTS Tyrosine kinase catalytic domain signature 1129 1147 IPR001245 GO:0004672|GO:0006468
Cmo18g00250 1296 PRINTS Tyrosine kinase catalytic domain signature 1200 1222 IPR001245 GO:0004672|GO:0006468
Cmo18g00250 1296 PRINTS Tyrosine kinase catalytic domain signature 1244 1266 IPR001245 GO:0004672|GO:0006468
Cmo18g00250 1296 Gene3D - 203 284 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 34 54 - -
Cmo18g00250 1296 SUPERFAMILY CAD & PB1 domains 200 285 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 953 975 - -
Cmo18g00250 1296 CDD STKc_MAP3K-like 1016 1273 - -
Cmo18g00250 1296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1135 1147 IPR008271 GO:0004672|GO:0006468
Cmo18g00250 1296 SUPERFAMILY Protein kinase-like (PK-like) 1001 1272 IPR011009 -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 954 975 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 726 805 - -
Cmo18g00250 1296 SMART PB1_new 199 285 IPR000270 GO:0005515
Cmo18g00250 1296 Gene3D Transferase(Phosphotransferase) domain 1 1098 1295 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 726 744 - -
Cmo18g00250 1296 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 98 1284 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 752 770 - -
Cmo18g00250 1296 Pfam Protein tyrosine and serine/threonine kinase 1011 1273 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00250 - - - csv:101217445 2048.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00657 Cmo-Chr2:4144099 Cmo18g00250 Cmo-Chr18:1655442 2.28E-77 dispersed
Cmo06g01273 Cmo-Chr6:9595662 Cmo18g00250 Cmo-Chr18:1655442 8.80E-37 dispersed
Cmo12g01014 Cmo-Chr12:9478314 Cmo18g00250 Cmo-Chr18:1655442 4.93E-28 dispersed
Cmo14g01923 Cmo-Chr14:14273940 Cmo18g00250 Cmo-Chr18:1655442 7.71E-18 dispersed
Cmo18g00250 Cmo-Chr18:1655442 Cmo20g00304 Cmo-Chr20:1483839 1.28E-83 dispersed
Cmo10g00526 Cmo-Chr10:2390091 Cmo18g00250 Cmo-Chr18:1655442 1.94E-31 transposed
Cmo13g00880 Cmo-Chr13:7969747 Cmo18g00250 Cmo-Chr18:1655442 1.31E-34 transposed
Cmo13g00879 Cmo-Chr13:7963519 Cmo18g00250 Cmo-Chr18:1655442 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g132 . . . . . . . . . Cmo18g00250 . . . . . Cpe09g00929 . . . . . . . . . . . . . . . Cone2ag0800 . . . . . . . . . . . . Bpe02g02335 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012656 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75043 PF07714 PK_Tyr_Ser-Thr 2.20E-61 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00250 Cmo_Chr18 FPKM 239.0625 267.30249 263.347382 260.455292 226.080353 261.061005 215.293854 440.108612 415.140442 392.903839