Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00250 ATGGAAAGAAATGTGAAAAGAGGTACCATAGATCAACATAGCAATTATGAACAAGTTCGACATACTAATTTGGAAGCAAGAAATCAGGGACTTGGGTCGACAATTCAAAGATCTTTCCACGATCCATCAAGCAACATCAGCTCCAACATTCGACCCCCTGAATATAATATGCCAGTTGGAGCTAGTCCTGTCCACAACTACTCCATTCAAACTGGCGAGGAATTTGCACTTGAATTTATGCGGGAAAGGGTGAATGCCAAGCATCAATTTATTCCCACCAATAGTCCTGACCCAGGTGTTACAACTGGGTACATGGATTTAAAAGGCATTGTAGGACTTCCCCATCCAAGTTCCGAGAGTGGATCTAGTATTCCCATGCTCAACCCTGTAGAAAAAGATCATGTTCAACATTTTGAAAGAGGGGGCTTTTCACATGAAGAAAAGAGTATATATAATTCAAGGAGGTTTGTCCCAAGAGCCTCATCAAGAAATGATGTCATTCCACTTCATGGTTCTACATCTTCAGGAGCATCTGATAGCTCATCAAGAAAGGTGAAATTCATGTGCAGTTTTGGTGGTAAAGTCATGCCTCGCCCTAGTGATGGAAAACTTAGGTATGTTGGAGGGGAAACACGTATTATCCGTATAACCAAGGATATTTCTTGGTTGAATCTGCTGCAGAAAACATCAACAATTTACGATCAAGTTCATACTATTAAATATCAGTTACCTGGTGAGGATCTTGATGCATTGGTTTCTGTATCTTGTGATGAGGACTTGCAAAACATGATGGAGGAATGTAATGTAACAGAATATGGGGGCTCAACAAAGCCAAGAATGTTCTTGTTTTCTATTTCTGATTTGGAGGATGCTCAAATTGGTGTCAGAAGTGCAGAGGGTGATACAGAGTTTGAATATGTAGTAGCTGTAAATGGTATGGACCTCAGTTCAAGAAGGAACTCCACGCCGTTGGCCAATACTTCAGGAAACAATTTAGATGAGTTGCTTGCCCTTAACGTTGGATCAGAGAGTGGTCAAGTTGCTCCAGAATTGTCTGACAACATCAAATCATCTCTGACCATTTCTGCACCTTCATTTTCTCCGTCCTCTCAAACCAGTTGGACCAATTCATCTAGTGGTTTCAAGCCCAATTTGCAGCAATTGTCAGGACAAAAGTTGCAGCAAGGTGATTTTGGGCCTCCCCAACTCTCTTCTTTCCGCCCCATGCAAAGTTTATCTGAAAATGTTGGAAAGACTTCAATTCCTTCATCCATTCAGGCACAACGTGAGTATGTTCTTATTAACAATGCGGCACCTGTAGAGAATATATCTTCAATTCCCAGCAAAGGACATGTGAATCAACAGGGTGGCTTGGCTACAGACAATCCGGTCGGTAGTTTTCACACACAAGATTCAGATGCGTCGTTAAAGGAGGGTAAAATTACAGAGATTCCAACTTTGAAGCTGAATGAACCTGATAAAATTCAATCGTTGGAAAAGGAGGCATCATTTAAGGATGCACAAATTAAAAGGCAAGGCTCTCTCCATAAGATCGATGAAACTAATGAAAGCGAAAATTTTGAACATGAATACTTGGTTTCATCAAACCTAAATGATGCTTCTGTTTTGAGCTATAACTCAAAAGGAGTGCAGGTAATTAATTTAGACACAGATGTAGGATCAAGTTTCCCGCTTTCAAAAAGCAACAAGAAGCATCAAGATCCTGCTCAAGAATCAGTACCCCTAGAAGTGAGTAATGAAGGAAACAATAGAACTGAAGGTGATAAATTTTCATCTGATGGACTTCCAACTATTGGTTTTGGTGCCTCTGAGGCTGATGAAACAGGGTTTAGCTACCATGAACCCATTTTACCTCCACGTGTTTTTCACTCTGAAAGGATTCCAAGGGAGCAGGCTGAATTGAACCGTTTATCCAAATCTGATGATTCCTTTGGCTCTCAGTTTCTTAGAACTCAGGATAACTCCAATTTTTCTCAGACAATTATTGAATCAGCTGAAACATTGCTGGATGGGAATGCGACTCTGAAGCCTGAGCAATCTGTTTCATCTTCAAATGTTCCACGTGGAAATAGTCATGCTGTAGAAGATGGATTGGAGGCATTTGAAAAGTACAAAACATTAGCAGATACCAGTAATAAAATGATGAATATTTCAGGTGAGCATGATGGGTCTGAGGTCAGTGATATGTCCAATATTAGAAGCCCTTCTGCCAATAGGAAGGAAGCAGGAGGTTTGGCTCGTCTTAGGGCAAGTGAAGAAGTTTCTGACAAGTGTAAGGAGGAATCTCTTATGGGACCCCTGGAATCAGGCTGGATTGACGGAAGTACACATAAGAACCAAGGAAATGAAACTCAAGAGCAAACAGAGCCTTCATCATTGGCAGAGAATCCTGGTAAAACTGTTACTGAAGTAGAATCTGGAGTTGGTATTAACACTCCAGAGCATGGGGACATTCTTATTGATATTAATGACCGCTTTCCACGTGATTTCCTTTCTGATATATTCTCAAAGGCCAGAAACTTTGAAAGCATTTCTGGCATCAATCCATTGCATGCTAATGGGGCTGGCTTGAGCTTGAACGTGGAGAATCATGAGCCTAAGCGTTGGTCATACTTTAGAAACTTGGCTCAGGAGGAGTTTGTTGGAAGGGATGCTTCTCTTATGGATGATGACCACCTGGGCTTCTCTTCCTCACTTGCAAATTCAGACGTAGGTGCGATTTATCACAGAGATTCTCAAATCAATTTTGGTGACAACATTCAGCAGGAATCCTGTCTGCTCACTGGACCCAGCTCTACAAATCCATATACAGATTATGTTTCTTCAAAGCTTAAGGGCGATGACAGCATACAGTTGGATGATCCTAGCGCTAAAGCCCAACACACTAAAGGCCAACATGCTGAGAATGATGCAAAATTGGATATCCAAGATATTGGTGTACCTTTGGCTGATATTTATCTTGAAGAATTTGATATCAGTACGTTGCAGATAATTAACAATGAAGATCTTGAAGAGCAACGAGAACTGGGTTCTGGCACATTTGGTACAGTGTATCATGGGAAGTGGCGAGGATCAGATGTAGCAATTAAACGGATAAAAAAAAGTTGTTTCACCTGTAGGTCATCAGAGCAAGAAAGATTGACTGTAGAGTTTTGGCGTGAAGCTGAGATTCTTTCAAAGCTTCATCATCCAAATGTGGTGGCCTTTTATGGTGTGGTGCAGGATGGGCCAGGTGGGACGTTGGCCACAGTGACTGAGTTCATGGTCAATGGCTCCTTACGGAATGTTTTACTTAGCAAAGACCGGTACCTGGATCGACGCAAGAGGCTTATTATTGCAATGGATGCAGCATTTGGAATGGAATATCTGCATTCAAAGAATATTGTGCACTTTGATTTAAAATGCGACAACTTGCTTGTCAACTTGAAAGACCCTTTACGGCCAATTTGCAAGGTTGGAGATTTTGGCTTGTCAAAAATAAAAAGAAACACATTAGTTACTGGCGGTGTCAGAGGGACCCTTCCATGGATGGCTCCTGAACTACTTAACGGTAGCAGCAGCAAGGTTTCTGAAAAGGTTGACGTATTCTCATTTGGCATTGTACTATGGGAGATCCTCACTGGCGAGGAGCCATATGCAAATATGCACTATGGAGCAATCATAGGAGGCATAGTGAACAACACATTGAGACCACCGGTACCAAACTTCTGTGACCCCGACTGGAGATTGCTGATGGAACAGTGTTGGTCGCCTGACCCGGTAGCCCGGCCATCTTTCACAGACATAGCGAGGCGATTGCGTGTGATGTCTACGGCTACCCAGACAAAAGCACCACACGGTCATCAACCACAGAATCAGGCACCCAAGTAA 3891 42.1 MERNVKRGTIDQHSNYEQVRHTNLEARNQGLGSTIQRSFHDPSSNISSNIRPPEYNMPVGASPVHNYSIQTGEEFALEFMRERVNAKHQFIPTNSPDPGVTTGYMDLKGIVGLPHPSSESGSSIPMLNPVEKDHVQHFERGGFSHEEKSIYNSRRFVPRASSRNDVIPLHGSTSSGASDSSSRKVKFMCSFGGKVMPRPSDGKLRYVGGETRIIRITKDISWLNLLQKTSTIYDQVHTIKYQLPGEDLDALVSVSCDEDLQNMMEECNVTEYGGSTKPRMFLFSISDLEDAQIGVRSAEGDTEFEYVVAVNGMDLSSRRNSTPLANTSGNNLDELLALNVGSESGQVAPELSDNIKSSLTISAPSFSPSSQTSWTNSSSGFKPNLQQLSGQKLQQGDFGPPQLSSFRPMQSLSENVGKTSIPSSIQAQREYVLINNAAPVENISSIPSKGHVNQQGGLATDNPVGSFHTQDSDASLKEGKITEIPTLKLNEPDKIQSLEKEASFKDAQIKRQGSLHKIDETNESENFEHEYLVSSNLNDASVLSYNSKGVQVINLDTDVGSSFPLSKSNKKHQDPAQESVPLEVSNEGNNRTEGDKFSSDGLPTIGFGASEADETGFSYHEPILPPRVFHSERIPREQAELNRLSKSDDSFGSQFLRTQDNSNFSQTIIESAETLLDGNATLKPEQSVSSSNVPRGNSHAVEDGLEAFEKYKTLADTSNKMMNISGEHDGSEVSDMSNIRSPSANRKEAGGLARLRASEEVSDKCKEESLMGPLESGWIDGSTHKNQGNETQEQTEPSSLAENPGKTVTEVESGVGINTPEHGDILIDINDRFPRDFLSDIFSKARNFESISGINPLHANGAGLSLNVENHEPKRWSYFRNLAQEEFVGRDASLMDDDHLGFSSSLANSDVGAIYHRDSQINFGDNIQQESCLLTGPSSTNPYTDYVSSKLKGDDSIQLDDPSAKAQHTKGQHAENDAKLDIQDIGVPLADIYLEEFDISTLQIINNEDLEEQRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFTCRSSEQERLTVEFWREAEILSKLHHPNVVAFYGVVQDGPGGTLATVTEFMVNGSLRNVLLSKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPPVPNFCDPDWRLLMEQCWSPDPVARPSFTDIARRLRVMSTATQTKAPHGHQPQNQAPK 1296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1655442 1663866 + CmoCh18G002500.1 Cmo18g00250 402023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00250 1296 SMART serkin_6 1010 1276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00250 1296 ProSiteProfiles Protein kinase domain profile. 1010 1275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00250 1296 CDD PB1_UP2 188 283 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 34 52 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 366 385 - -
Cmo18g00250 1296 PANTHER SERINE-THREONINE PROTEIN KINASE 98 1284 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 780 805 - -
Cmo18g00250 1296 Pfam PB1 domain 201 283 IPR000270 GO:0005515
Cmo18g00250 1296 ProSitePatterns Protein kinases ATP-binding region signature. 1016 1041 IPR017441 GO:0005524
Cmo18g00250 1296 Gene3D Phosphorylase Kinase; domain 1 1003 1097 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 564 602 - -
Cmo18g00250 1296 PRINTS Tyrosine kinase catalytic domain signature 1092 1105 IPR001245 GO:0004672|GO:0006468
Cmo18g00250 1296 PRINTS Tyrosine kinase catalytic domain signature 1129 1147 IPR001245 GO:0004672|GO:0006468
Cmo18g00250 1296 PRINTS Tyrosine kinase catalytic domain signature 1200 1222 IPR001245 GO:0004672|GO:0006468
Cmo18g00250 1296 PRINTS Tyrosine kinase catalytic domain signature 1244 1266 IPR001245 GO:0004672|GO:0006468
Cmo18g00250 1296 Gene3D - 203 284 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 34 54 - -
Cmo18g00250 1296 SUPERFAMILY CAD & PB1 domains 200 285 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 953 975 - -
Cmo18g00250 1296 CDD STKc_MAP3K-like 1016 1273 - -
Cmo18g00250 1296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1135 1147 IPR008271 GO:0004672|GO:0006468
Cmo18g00250 1296 SUPERFAMILY Protein kinase-like (PK-like) 1001 1272 IPR011009 -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 954 975 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 726 805 - -
Cmo18g00250 1296 SMART PB1_new 199 285 IPR000270 GO:0005515
Cmo18g00250 1296 Gene3D Transferase(Phosphotransferase) domain 1 1098 1295 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 726 744 - -
Cmo18g00250 1296 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 98 1284 - -
Cmo18g00250 1296 MobiDBLite consensus disorder prediction 752 770 - -
Cmo18g00250 1296 Pfam Protein tyrosine and serine/threonine kinase 1011 1273 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00657 Cmo-Chr2:4144099 Cmo18g00250 Cmo-Chr18:1655442 2.28E-77 dispersed
Cmo06g01273 Cmo-Chr6:9595662 Cmo18g00250 Cmo-Chr18:1655442 8.80E-37 dispersed
Cmo12g01014 Cmo-Chr12:9478314 Cmo18g00250 Cmo-Chr18:1655442 4.93E-28 dispersed
Cmo14g01923 Cmo-Chr14:14273940 Cmo18g00250 Cmo-Chr18:1655442 7.71E-18 dispersed
Cmo18g00250 Cmo-Chr18:1655442 Cmo20g00304 Cmo-Chr20:1483839 1.28E-83 dispersed
Cmo10g00526 Cmo-Chr10:2390091 Cmo18g00250 Cmo-Chr18:1655442 1.94E-31 transposed
Cmo13g00880 Cmo-Chr13:7969747 Cmo18g00250 Cmo-Chr18:1655442 1.31E-34 transposed
Cmo13g00879 Cmo-Chr13:7963519 Cmo18g00250 Cmo-Chr18:1655442 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75043 PF07714 PK_Tyr_Ser-Thr 2.20E-61 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00250 - - csv:101217445 2048.48