Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00253 ATGAACAGCACAAGAGAAGTGGAAATTGTGGGTTCAATTCCACAGGAGGAGGATCAAAAAGACCCAGAAGCTGGTTCCAATTCGATTGATTCTCGACCCAAATTTATCCCACAAGAACAAGAACAAGAACAAGAACAAGAACGCGAACGCGCTTCTTCGTTGAGTGAGAAAGTCGAGGTGGTTGTCGAACGCAACCTCATTCTTGCAGCGTCTATCGGTGACGACTTTCAATTGGAAGTCACTGCCGATCAGATCAATAGCCACTGCGCCACGGCCGACACCCAAACCGTCGACATTGAAGAACCCCTTGATGAAGAAACTAAACAGTTGAGGACAACCGCCAAAAAAATCAGCCTATATCACGCTGCACTCAAGGGAGATTGGGAGAAGGCTCAATCCATTCTAGGCGCGGACCCTTCATGGGCTGTAAGCAACTACATAACGCGAGACAACGAGACAGCTCTTCACATTGCTGCTGGGGCCAAGCACGTCGATTTCGTAGAGCAATTGATCAACATAATGACCCCAGACGACATGACTATGGTAAACACTCATGGAAACACTGCCCTTTGCTTTGCTGCAACCTCGGGTGTTGTAAGAATCGCTGAACTGATGGTGCAAAAGAACAAAGATCTTCCCCTTATTCGTGGATTTGGTAATGCCACTCCCCTGTTCATGGCTATATCGTATCAACGCAAGCAAATGGCTTCTTATCTGTTCTCTGTTACCGATCGAAAGCAGCTGAGCTCTCAAGACCAGATTGAGCTTCTTATTGCTACCATTCATAGTGATTTTTATGATATAAGTTTGGAGATTCTGGAAAGGAACCCTAAGTTAGCGATTATGAGAGACACTAAGAATAATAATGAGACGGCGTTGCATGTCTTGGCAAGGAAACCATCTGCCATTAGTAGCAGATCAGAGATGAGTGTTTGGAAGAAGCGTATCAACTCATGGACAAGAGGAATCTACGAGAAAGAAGTGATGAAGACACTAGCTCATCAACTAGTTAGATCACTATGGGGACATGTCCTACGAGAATTACCCGAAAAAAAGATGTTAAAGTTCATCAAACATCCCACAATACTCTTACACGATGCAGCAAGAGCAGGCAACGTCGAGTTTCTAATCCTCCTCATTCGATCATACCCAAACATCGCATGGGAAGATGACGAAAATGGCCAGAATGTCTTTCACGTAGCCGTTGAAAATCGCCTCGAGAATGTGTTCAGCCTAATCCACGAGATAAGTGGCCTCAAAGACTTCTCAGCAAAGTACAGAACAACAGGTCAAGAAAAGTACAACATGCTTCATTTAGCTGCAAAGCTCGCCGCTCCAAACCATCTCAACAGAGTCTCGGGAGCAGCCCTTCAAATGCAACGTGAATTACTTTGGTTCAAAGAAGTAGAAAAGATCGTGTTACCATCCCAACGTGAAGCCAAATGTGAGTTTGAGTCTCTTAAGTTAATACCAAGTGAGTTATTCACTAAAGAACATAAAGATCTTCGTAAAGAAGGTGAAGAATGGATGAAGAACACAGCAAATTCTTGTATGCTTGTCTCAACTTTGATAGCTACTGTTGTTTTTGCTGCTGCTTTCACAGTTCCTGGTGGCAATGATGCTAAAGGCACCCCTGTTTTTCAACGTGAGTTTTGGTTTACTATATTTGTGATATCAGATGCATTTGCGTTGGTATCATCTTCAACTTCTATTCTTATGTTCTTGTCGATTTTGACATCACGTTATGCGGAAGATGATTTCTTGCACTCATTGCCGTCTAAGCTGCTGTTTGGAATAGCGTCGCTGTTCATATCAATTGTGTGCATGGTTATAGCGTTTAGTGCGACATTCTTTATGCTCTATGATGGGACCAATGTGTGGATACCGACCACTGTGACAGCAATAGCTATTGTGCCAATTAGCTGCTTCTTTGCGCTTCAATTTGGACTGTGGATGGATACGTTTTACAACACTTACTTGTCTAGACTTCTGTTCAAACCCCATCAACGTAAGTTGTTCTCATCCTCTGCTTCTCTTGCTGTTGAATTGTTTCGTGAGCTTAAGAAAAGGAGAAGTGAGAGGAAATACTATCGGTGGGAACGTTGTGATTGTTTACTTGTTTGTTTGTTATGTTGTGATTATGAGATATGTTATGTTATGGAATATCTTGTTGACATGTTGTGTGGTTGA 2190 42.88 MNSTREVEIVGSIPQEEDQKDPEAGSNSIDSRPKFIPQEQEQEQEQERERASSLSEKVEVVVERNLILAASIGDDFQLEVTADQINSHCATADTQTVDIEEPLDEETKQLRTTAKKISLYHAALKGDWEKAQSILGADPSWAVSNYITRDNETALHIAAGAKHVDFVEQLINIMTPDDMTMVNTHGNTALCFAATSGVVRIAELMVQKNKDLPLIRGFGNATPLFMAISYQRKQMASYLFSVTDRKQLSSQDQIELLIATIHSDFYDISLEILERNPKLAIMRDTKNNNETALHVLARKPSAISSRSEMSVWKKRINSWTRGIYEKEVMKTLAHQLVRSLWGHVLRELPEKKMLKFIKHPTILLHDAARAGNVEFLILLIRSYPNIAWEDDENGQNVFHVAVENRLENVFSLIHEISGLKDFSAKYRTTGQEKYNMLHLAAKLAAPNHLNRVSGAALQMQRELLWFKEVEKIVLPSQREAKCEFESLKLIPSELFTKEHKDLRKEGEEWMKNTANSCMLVSTLIATVVFAAAFTVPGGNDAKGTPVFQREFWFTIFVISDAFALVSSSTSILMFLSILTSRYAEDDFLHSLPSKLLFGIASLFISIVCMVIAFSATFFMLYDGTNVWIPTTVTAIAIVPISCFFALQFGLWMDTFYNTYLSRLLFKPHQRKLFSSSASLAVELFRELKKRRSERKYYRWERCDCLLVCLLCCDYEICYVMEYLVDMLCG 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1683325 1688326 - CmoCh18G002530.1 Cmo18g00253 402026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00253 729 SUPERFAMILY Pseudo ankyrin repeat-like 312 442 - -
Cmo18g00253 729 MobiDBLite consensus disorder prediction 36 53 - -
Cmo18g00253 729 MobiDBLite consensus disorder prediction 1 53 - -
Cmo18g00253 729 PANTHER CASKIN 147 673 - -
Cmo18g00253 729 MobiDBLite consensus disorder prediction 11 27 - -
Cmo18g00253 729 Pfam Domain of unknown function 507 619 IPR026961 -
Cmo18g00253 729 Pfam Ankyrin repeats (3 copies) 119 211 IPR002110 GO:0005515
Cmo18g00253 729 Gene3D - 85 450 IPR036770 -
Cmo18g00253 729 SMART ANK_2a 219 248 IPR002110 GO:0005515
Cmo18g00253 729 SMART ANK_2a 150 181 IPR002110 GO:0005515
Cmo18g00253 729 SMART ANK_2a 185 214 IPR002110 GO:0005515
Cmo18g00253 729 SMART ANK_2a 393 424 IPR002110 GO:0005515
Cmo18g00253 729 SMART ANK_2a 359 388 IPR002110 GO:0005515
Cmo18g00253 729 PANTHER ANKYRIN REPEAT PROTEIN 147 673 - -
Cmo18g00253 729 SUPERFAMILY Ankyrin repeat 119 299 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00253 - - - csv:101209008 1150.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00253 Cmo-Chr18:1683325 Cmo18g00304 Cmo-Chr18:1959023 0 dispersed
Cmo18g00305 Cmo-Chr18:1966047 Cmo18g00253 Cmo-Chr18:1683325 7.46E-31 dispersed
Cmo18g00253 Cmo-Chr18:1683325 Cmo18g00258 Cmo-Chr18:1713640 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g140 . . . . . . . . . Cmo18g00253 . . . . . Cpe09g00926 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000053 7 13 4 5 0 9 1 8 10 14 9 9 8 14 25 9 10 1 8 10 21 9 4 11 15 19 13 25 15 12 318
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00253 Cmo_Chr18 FPKM 6.79529 6.154982 19.011602 19.836348 18.412769 17.791647 16.897562 0.904035 0.683283 0.693032