Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00258 ATGAGCAAAGTAGTGCAGAAGGATATGAAAAATTCAGTGAGGGTTCTCTTTAAAGAAGACGATGTTCCTTCTTCCACTTATGAATCCAATCCAAATGGAGAAGAACCAGCAACGCCACCAGCTCATAGGCCTCTTGTTAGCGATGAATGGGGTTCTTCCAACCATAAATACCTTGATGCTAATATCACTTGGTCCGCTCAGGACAAAGCTTCTGCTGCTGAGGCCGATGACGCCGATGTCGATGGAGGAGAAGAGAGCGATAACAACGCCACTGCTCGACCATCGACCGATGGCGATCGCTCCGAAACCGGAGCACTGGGACAAGAAAATCAGGGAAATGCCGCAGATCCCAGCCATCATTTTATTCTTTGCAACGCAAAAAAGAAGAGAGCATACCTTCCATTAAAAGTTGGGTTATATCAAGCAGCTTTAAAGGGTGATTGGAAGATAGCCAAATCTATATTTGACATTGATTCATCAACTATTACTATGAAGATTACTGATGCTGATGAAACTGCTCTTCATATTGCTGCTGCTGCAAAGCATATTCATTTTGTTGAAAATTTGGTTCAACTTACCTCTCCAGCTGACTTAGCTGCTAAAAATGAGAAGGGAAACACTGCTCTTGCTTTTGCAGCTGCATCAGGAGTTGTAAGGATTGCTAAAGTAATGGTTGACAAGAATCCTGATCTTCCAGATCTTCATGATCTTTATAAACCAACCCCAGTTTTAATGGCGGTAGCTTACAAACGCAAAGACATGGCTTCTTTCCTATTCTCCAAGACTAAATTTGAAGCTTTGGATACTTCTGAACAGATTGAGCTTCTTATTGAAACCATTTCCACTGACTATTACGATATAGCATTAGAAATTCTGAAAAAGAAACCTGAATTAGCAAAGGAGAAAATGGAGAATGGCGACACAGCTTTGCATGTACTTGCTAGAAAACCATCTGCTATTGGTAGCCACGCCGAGCTTAGCTTTTGGAAAACATCCATAAACTCTCGCTTTCACGGACTTTACAACAAAGCTCTGATGCAGACACTAGCTCATCAAACAGTAGAACGTCTATGGAATTTTGTTGTCAAGGAACTTACAAAACGAGAGCTATATAGTTTTATAAAAAACCCTTCAAGGTTGTTGCACGATGCTGCAAGAGTTGGAAACGCTGAGTTCTTGATAATACTCATTCGTTCATATCCTGATTTGCTATGGAAAGTTGATGACGACGACAAGAGCATATTTCATATAGCAGTTGAAAATCGACAAGAGAGTGTGTTCAGTTTAATATATGAGATCGGAGGCCTCAAAGACTTTCTTGCCAACTTTCATGATAGAAAAAAACAATTCAATATGCTACACTTAGCTGGATTACTAGCCGCTCCAGATCACTTGAGTAGAGTTTCAGGAGCAGCTTTACAAATGCAACGCGAGCTTCTATGGTTCAAGGAAGTAGAGAAGATCGTAGTATCCTCCCATCTTCAAATGAGATGTGATCGAATTCCAGAGCTTTCCCAAGTAAAGATAACACAAGACCCAGTTGATAAACTAACACCCCGCGAGCTCTTTACAAAAGAACATGAACAACTACGAAAACAAGGCGAGGAATGGATGAAAAACACGGCGAACTCATGCATGCTGGTGGCGACACTGATAGCGACCGTAGTTTTTGCAGCAGCGTTCACAGTTCCAGGAGGCAACGATGACAAGGAAGGGATACCTATATTTCGACAGAATCAAGCGTTTACAGTGTTTGTAATATCAGATGTTGCAGCTCTAGTGTTGTCTACAACTTCTATACTCACGTTCTTATCAATCTTGACATCCCGCTATGCAGAAGAAGATTTCTTGGTGTCGTTGCCGAGCAAGCTATTGTTTGGGCTATTGACGCTATTCGTTTCTATTGCATGCATGGTGGTGGCTTTCAGTGCAGCCTTCTTTATTGCGTACGATAAAACAAAGGCGAAGATTCCATTGGCCATTGGAGCTGTGGCGATTCTTCCAGTTGGGTGTTTTTGTGTGTTTCATTCTAAACTTGTAGTGGACATATTGCGATCAGCTTATTGGTCTAAGTTTTCTTTGAGACAGCGTGAGAAAAGGTTGTTTTAG 2109 41.54 MSKVVQKDMKNSVRVLFKEDDVPSSTYESNPNGEEPATPPAHRPLVSDEWGSSNHKYLDANITWSAQDKASAAEADDADVDGGEESDNNATARPSTDGDRSETGALGQENQGNAADPSHHFILCNAKKKRAYLPLKVGLYQAALKGDWKIAKSIFDIDSSTITMKITDADETALHIAAAAKHIHFVENLVQLTSPADLAAKNEKGNTALAFAAASGVVRIAKVMVDKNPDLPDLHDLYKPTPVLMAVAYKRKDMASFLFSKTKFEALDTSEQIELLIETISTDYYDIALEILKKKPELAKEKMENGDTALHVLARKPSAIGSHAELSFWKTSINSRFHGLYNKALMQTLAHQTVERLWNFVVKELTKRELYSFIKNPSRLLHDAARVGNAEFLIILIRSYPDLLWKVDDDDKSIFHIAVENRQESVFSLIYEIGGLKDFLANFHDRKKQFNMLHLAGLLAAPDHLSRVSGAALQMQRELLWFKEVEKIVVSSHLQMRCDRIPELSQVKITQDPVDKLTPRELFTKEHEQLRKQGEEWMKNTANSCMLVATLIATVVFAAAFTVPGGNDDKEGIPIFRQNQAFTVFVISDVAALVLSTTSILTFLSILTSRYAEEDFLVSLPSKLLFGLLTLFVSIACMVVAFSAAFFIAYDKTKAKIPLAIGAVAILPVGCFCVFHSKLVVDILRSAYWSKFSLRQREKRLF 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1713640 1718878 - CmoCh18G002580.1 Cmo18g00258 402031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00258 702 PANTHER CASKIN 89 692 - -
Cmo18g00258 702 MobiDBLite consensus disorder prediction 1 52 - -
Cmo18g00258 702 MobiDBLite consensus disorder prediction 68 117 - -
Cmo18g00258 702 MobiDBLite consensus disorder prediction 88 115 - -
Cmo18g00258 702 Pfam Domain of unknown function 535 648 IPR026961 -
Cmo18g00258 702 SMART ANK_2a 169 200 IPR002110 GO:0005515
Cmo18g00258 702 SMART ANK_2a 376 405 IPR002110 GO:0005515
Cmo18g00258 702 SMART ANK_2a 204 233 IPR002110 GO:0005515
Cmo18g00258 702 SMART ANK_2a 238 266 IPR002110 GO:0005515
Cmo18g00258 702 SMART ANK_2a 410 441 IPR002110 GO:0005515
Cmo18g00258 702 SUPERFAMILY Ankyrin repeat 139 434 IPR036770 -
Cmo18g00258 702 Pfam Ankyrin repeats (3 copies) 139 230 IPR002110 GO:0005515
Cmo18g00258 702 PANTHER ANKYRIN REPEAT PROTEIN 89 692 - -
Cmo18g00258 702 Gene3D - 125 458 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00258 - - - mcha:111008583 1014.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00258 Cmo-Chr18:1713640 Cmo18g00304 Cmo-Chr18:1959023 0 dispersed
Cmo18g00306 Cmo-Chr18:1968784 Cmo18g00258 Cmo-Chr18:1713640 2.92E-35 dispersed
Cmo18g00307 Cmo-Chr18:1974628 Cmo18g00258 Cmo-Chr18:1713640 2.55E-12 dispersed
Cmo18g00253 Cmo-Chr18:1683325 Cmo18g00258 Cmo-Chr18:1713640 0 proximal
Cmo18g00258 Cmo-Chr18:1713640 Cmo18g00260 Cmo-Chr18:1726478 1.15E-19 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1049 . . . . . . . . . Cmo18g00258 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000053 7 13 4 5 0 9 1 8 10 14 9 9 8 14 25 9 10 1 8 10 21 9 4 11 15 19 13 25 15 12 318
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00258 Cmo_Chr18 FPKM 1.759259 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0