Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00261 ATGAGACCCTTCACACGCAGGCCTTCTACTTCTTCCTCCACTAAATCAACCCCCGGCCGTCACGACGGCAAGGCTGTTCGGTGGTCGGAGCCGGTCACCGGCGTTGACTCTCCTGCAGTAGAGGACCGCAATGCCGTCAACAACGATGAAGACGACGACGACTTTGAGGTCGGTGAAGATGAGTCGCCGGCGCGTGGGGATGAAGAAAATCCGCTACCGCTCGAGATTTACGGCAAACCGTTAGATCCCAGGACTAAAGATGTGAGCTGGCCTATGTCCAAATTTCACAGCTTCAGATTTTCCAAGAGTAGAAGAATGGACAATCGTCCACTGCGTGTTCAACTATACCAAGCTGCACAAAATGGCGACTGGAAGACTGCAGAGTACATGAATAATCTGCATCCAGGAGTCCTCACTATGGTCATAAGCGATCGATGTGAAACCGTTCTTCACATAGCAACTCGAGCCAAGAAGGCTTCTTTTGTGAAGGAATTGGTGAACTTCCTCGACCGACATGACTTGGGCTTGAAAAACAAATATGGAAACACAGCCCTTTGCATCGCTGCAGCCTCAGGCGCGGTCGACATCGCCAAGCTAATGGTCTCCAAGTTCGAAGCTTTGCCGCTCATTCGTGGGTCCGGAAATTCAACCCCAGTTTTGATTGCCGCTAGATACAAACACAAGCACATGGTCTCCTATCTCCTCTCCAAAACCCCCGTCTATGGCTCCGCCATTCAAGAGCAAATGGAGCTTCTCGTTGGCGCCATCTCGGCCGATTATTATGATATAGCTTTGCTTATTTTAAAGTGGAACCCGTTGTTAGTTCTCGAGCGAGACTTCAATGACGATACGCCGTTGCATATCATGGCTCGTAGGTCGAATGCAATTGGTAAGAAAAACAAGCCAACCCGGTTGCAATCGTATATTATTGATTGCGAAGAACAAACATCTAATCTCTTGGTCAAAGGAATCAAGCGTATGCACAAACATAAACTCATGCAGATTCAAGCTCATCAAATGGTTGAATTGATGTGGACTGTTGTTTTGGATGAGATTCCAGAAGATGAGATATTGCAATTCATCATGTTTCCCACAAGTATCTTGCATGATGCTGCAAGAGTTGGGAATGTTGAATTTTTGAGATTGATAATCAATTCATACCCTGATCTTGCTTGGAAAGTTGATAGTGATCGAAAGAGTATATTTCATGTAGCGGTTGAAAATCGTCAAGAGAGTGTTTTTAGTTTAATTTATGAAATGGGTGAGTTCTTGGATTACTTACCATTCTATTTTGATGAGGAAAATATTAGCTTGCTTGAACTAGCGGCAAAAAAGGCGGATCTAAATCATCTCAATCGAGTGTCGGGAGCTGCCTTTCAAATGCATAAAGAGCTTCTATGGTTTAAGGAAGTGGAGAAGATCGTAGAGCTTACAATGAGGAGAAAGAAAGGAAAGCGAAACCCACGTGAATTATTCACTAAAGAACACCGAAACTTAGTGGAAGAAGGTGAAAAATGGATGAAGAAAACAGCAAATTCATGCATGTTGGTTGCAACTCTAATTGCCACCGTAGTTTTTGCTGCAATCTTCACCGTACCAGGCGGCAACAACAACAACCACGACATCAACACCGGCTCTCCTCTCTTTCTCCGCCACAAATGGTTCACAGTGTTTGTGATATCAGATGCAACCGCTTTGATATCATCTTCAACATCGATACTATTGTTCTTGTCGATCCTCACGTCGCGTTGTGCCGAAGAGGACTTCCTAATTTGGTTGCCATTGAAGTTGGTGTGCGGCCTTGGAACACTGTTCTTGTCAGTACTGAGCATGGTTCTAGCTTTCAGTGCTACGTTCTTCCTGTTCTATGGGAAAGATACGGATTGGGTTCCATTGCTTGTTGCTGGGATGGCGATTGTTCCAGTTTATTGCTTTGGTGTGCTTCAGTTTAGGCTTTGGGCTGATGCATTAGCTGCTTTGCAGGCTTCTTACTACTTGTATTTCAAGAATTGGAAGTTCATATTGTTCTGA 2031 44.85 MRPFTRRPSTSSSTKSTPGRHDGKAVRWSEPVTGVDSPAVEDRNAVNNDEDDDDFEVGEDESPARGDEENPLPLEIYGKPLDPRTKDVSWPMSKFHSFRFSKSRRMDNRPLRVQLYQAAQNGDWKTAEYMNNLHPGVLTMVISDRCETVLHIATRAKKASFVKELVNFLDRHDLGLKNKYGNTALCIAAASGAVDIAKLMVSKFEALPLIRGSGNSTPVLIAARYKHKHMVSYLLSKTPVYGSAIQEQMELLVGAISADYYDIALLILKWNPLLVLERDFNDDTPLHIMARRSNAIGKKNKPTRLQSYIIDCEEQTSNLLVKGIKRMHKHKLMQIQAHQMVELMWTVVLDEIPEDEILQFIMFPTSILHDAARVGNVEFLRLIINSYPDLAWKVDSDRKSIFHVAVENRQESVFSLIYEMGEFLDYLPFYFDEENISLLELAAKKADLNHLNRVSGAAFQMHKELLWFKEVEKIVELTMRRKKGKRNPRELFTKEHRNLVEEGEKWMKKTANSCMLVATLIATVVFAAIFTVPGGNNNNHDINTGSPLFLRHKWFTVFVISDATALISSSTSILLFLSILTSRCAEEDFLIWLPLKLVCGLGTLFLSVLSMVLAFSATFFLFYGKDTDWVPLLVAGMAIVPVYCFGVLQFRLWADALAALQASYYLYFKNWKFILF 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1733948 1739173 + CmoCh18G002610.1 Cmo18g00261 402034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00261 676 Pfam Ankyrin repeats (3 copies) 115 203 IPR002110 GO:0005515
Cmo18g00261 676 MobiDBLite consensus disorder prediction 1 19 - -
Cmo18g00261 676 SMART ANK_2a 214 243 IPR002110 GO:0005515
Cmo18g00261 676 SMART ANK_2a 145 174 IPR002110 GO:0005515
Cmo18g00261 676 SMART ANK_2a 397 426 IPR002110 GO:0005515
Cmo18g00261 676 SMART ANK_2a 180 209 IPR002110 GO:0005515
Cmo18g00261 676 SMART ANK_2a 363 392 IPR002110 GO:0005515
Cmo18g00261 676 MobiDBLite consensus disorder prediction 46 63 - -
Cmo18g00261 676 PANTHER ANKYRIN REPEAT PROTEIN 82 658 - -
Cmo18g00261 676 MobiDBLite consensus disorder prediction 1 80 - -
Cmo18g00261 676 Gene3D - 101 306 IPR036770 -
Cmo18g00261 676 Gene3D - 355 462 IPR036770 -
Cmo18g00261 676 PANTHER CASKIN 82 658 - -
Cmo18g00261 676 SUPERFAMILY Ankyrin repeat 115 445 IPR036770 -
Cmo18g00261 676 Pfam Domain of unknown function 504 620 IPR026961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00261 - - - cmos:111456953 1264.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00783 Cmo-Chr13:7503779 Cmo18g00261 Cmo-Chr18:1733948 4.35E-95 dispersed
Cmo13g00784 Cmo-Chr13:7508897 Cmo18g00261 Cmo-Chr18:1733948 0 dispersed
Cmo13g00786 Cmo-Chr13:7515056 Cmo18g00261 Cmo-Chr18:1733948 7.47E-74 dispersed
Cmo18g00261 Cmo-Chr18:1733948 Cmo18g00304 Cmo-Chr18:1959023 2.93E-167 dispersed
Cmo18g00556 Cmo-Chr18:4421701 Cmo18g00261 Cmo-Chr18:1733948 1.30E-41 dispersed
Cmo18g00260 Cmo-Chr18:1726478 Cmo18g00261 Cmo-Chr18:1733948 2.74E-37 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1050 . . . . . . . . . Cmo18g00261 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000053 7 13 4 5 0 9 1 8 10 14 9 9 8 14 25 9 10 1 8 10 21 9 4 11 15 19 13 25 15 12 318
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00261 Cmo_Chr18 FPKM 0.591002 0.0 0.368315 0.350587 0.371121 0.347015 0.91918 0.421107 0.123755 0.194064