Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00273 ATGGTGGAGCTTCAAGCTTGTGCAACTGGTTTGGTTAATCCGTCGGCATTATGTGCTGCAATAGACCAAGAATCCAAAGGGGAGAATATGAATGTTATTGCTCGAATGGCGGATGAGTTACACAGAGAGAGACAGAGAAATGTGAAGTTAATGGAGAGAATATCGTTTCTGGAAGCTAAATTGTTACAGGAAAGAGTTAAGGATCCTGAACTTGGTGATGAACTAGGCAGTTGTTCCAAGCGGAGAAGCTTCAAGAGGCTTAAAAGAAGCAAAGAGGAAGCAATAATGAAGGATGGAACTCAGTTTTTGTCCCCAAAAGAGGTAAATCTAGAGGATCGATTGGTTAGTTGGATGAGTATGGATGAGACACAGTTTGTGCATTATGAAAAGTTAAAGGAATGTGATAATACTGTAGATTGTGTTGATTCAGACGAAACTGATAATGAAAATAGTTATTATCATGAGGAGAGTGAAATCCCTTTTGACATCAAGGATTGGGAAACTAATGGGAATTCAAGGAGTGTCAATGGTGTTAAACAAGATATATATCATGATTCGAATTCGGAACGTATGGAGAATCAATCTGGTCCTGAAAACAAGCCAACATTTGTAGATGATCAAACAGAAACTAAAGAAACTGGAAAAAAACTAGAGCCTAAAAGTGAAAGGAACGAAACCGAAAACAGTGAACTGTATGATCGAAATCGAAACATCCTGGGATCTGGGAATGATGTAGGATTTGGAAGTGTATCATTGCAAAGAAAGCCTCCAAAGTTAGCGTTCTGTCCTAAAGAAGTGAAGGGAATTATTGAATCAGAAGCTTTGCTGCAGAGAAACGCCCAGTCTCATACCATGAGGAAAATAATAGTGTTTTCATGTCTTGGTATAAGGCATGGCTGTGAAGAGATGTATGAGTTAGACTTCAATCATTTCAGTATTATAAGGAAAGGAGAGCCATTCATTTCTCCTCAAAATCCTGGGGAGCATGTGTTGTATGAGAATCCTGGTGTGAGGAGGAAGATTTTGTATCCCAACAGGCACCACCCAACACTATGTCCTGTTCAAATACTTGAAGAAGAGAAAGCAATGCGACCATTAGATGTTAACTGTCCTTCTTGTTTATTTCTCTGCATCAAATATGGTGGCAGGACGAGGAATCTTCCGCAGAACGAGATGGCTAGGCTAGCTAATCCTCGCAGTGGGAGCTTTTTCTTCAAAGCATTGGGCATTACCCTTCTCTTCATGGCTGGTTTTCCGGATGACCTTGTTCGCAAAGAAACCAAATACCGTAATTTGGACTTGCTTCAGAAATACTACAGGACAGACAAGGATGCCGTAGGCGAGGAGCTATTTCTTGCACGCTCGACAGCCGACAGTAATGATGACAAATTTGTTCAGGAGCAGCTAGCTGGAAATACCATTTCAGCAAAATCAAGGGGGAAAAAACAAACTAGCACAAGCGAACAGCCTGGTTCTTCAGATAAAACAGCACCCCATTTGGCATCATCTTCAACAAAATTTGGATCAGTAGGGTATACTTCGATCCAAACTCGTGCTATGGCAGCATTTCAGTCACTCCCATCTCCATCTCAGACACCAATTGATAGCAACCATCCAATTTCTTCATGTGCTGTGGCCTCCTACCAAAATCAAAACCCCCTTAATTATTTCCCACCAAACGCGTTCGTTCCTCTGATGTATTGGCCGCCTCCAAACTCATTCAATCCAGGGCTCTACCCTTCAGCTTATACATATCATTCTTTTCCATATAGTGGCAATTTTATCTCCTTCAATCAGCCTCATTGCAGCTTTCCCTATAGCCCCTTCACGCCAAAAGCTATGGAAGATGCAAAGAATGAGGATCTATTAAAAGAAACAGATAGTAATTCTGACACTACTTCAAGCATGCTTCCTGATCTCACCCTTTGTGCCAGTCAGAGGGTTGTTCTCAGAAAGGATGGCAATGGCTCCCCCTCTTCTCCGCCAAGCCAGACCTCAGCTCCCTCCCCGGCAGCTAAACCATGTCCTGCTCAAACCTCACAATTTTCCCCAGTCCACTGCGGCCTTCGGGAGCTCCGAGACCGTATCGATTCCGTCAAGAACACCCAAAAGATCACTGAAGCCATGAAGCTTGTCGCAGCAGCCAAAGTCCGCAGAGCTCAAGAAGCTGTCGTTAATGGAAGACCCTTCTCAGAGGCCTTGGTCGAGGTCCTTTACAACATCAATGAACAACTCCAAACAGAGGACATTGACACTCCTCTAACCAAAGTTAGACCCGTCAAGAAAGTCGCATTGGTTGTTGTCACCGGCGACCGCGGCCTCTGTGGTGGCTTCAACAATTCCATCATCAAGAAAGCCGAAGCCAGAATCTCGGAATTGAAGGAATTGAGTCTTGACTACACTGTAATCAGCGTTGGTAAAAAGGGTAACACTTATTTCCTCCGCCGGCCGTACATTCCGGTGGATAAATTCCTCGAAGGCGGCACTCTTCCGACAGCCAAAGAAGCTCAAGCCATAGCTGATGATATTTTTTCCTTATTTGTAAGCGAGGAAGTCGATAAAGTAGAGCTTTTATACACAAAATTCGTGTCGTTAGTCAAATCCGACCCTGACCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTGAACAGCCAGATTTTGAGGTCTGCAAGAGTCGCTGGCGAACAACGCCAAGCTAAGATTACTGGAGAAATTTTGGAGATTGTTGCTGGTGCTAATGCATTGACTTGA 2757 43.45 MVELQACATGLVNPSALCAAIDQESKGENMNVIARMADELHRERQRNVKLMERISFLEAKLLQERVKDPELGDELGSCSKRRSFKRLKRSKEEAIMKDGTQFLSPKEVNLEDRLVSWMSMDETQFVHYEKLKECDNTVDCVDSDETDNENSYYHEESEIPFDIKDWETNGNSRSVNGVKQDIYHDSNSERMENQSGPENKPTFVDDQTETKETGKKLEPKSERNETENSELYDRNRNILGSGNDVGFGSVSLQRKPPKLAFCPKEVKGIIESEALLQRNAQSHTMRKIIVFSCLGIRHGCEEMYELDFNHFSIIRKGEPFISPQNPGEHVLYENPGVRRKILYPNRHHPTLCPVQILEEEKAMRPLDVNCPSCLFLCIKYGGRTRNLPQNEMARLANPRSGSFFFKALGITLLFMAGFPDDLVRKETKYRNLDLLQKYYRTDKDAVGEELFLARSTADSNDDKFVQEQLAGNTISAKSRGKKQTSTSEQPGSSDKTAPHLASSSTKFGSVGYTSIQTRAMAAFQSLPSPSQTPIDSNHPISSCAVASYQNQNPLNYFPPNAFVPLMYWPPPNSFNPGLYPSAYTYHSFPYSGNFISFNQPHCSFPYSPFTPKAMEDAKNEDLLKETDSNSDTTSSMLPDLTLCASQRVVLRKDGNGSPSSPPSQTSAPSPAAKPCPAQTSQFSPVHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDIDTPLTKVRPVKKVALVVVTGDRGLCGGFNNSIIKKAEARISELKELSLDYTVISVGKKGNTYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDIFSLFVSEEVDKVELLYTKFVSLVKSDPDPVQILDALLPLYLNSQILRSARVAGEQRQAKITGEILEIVAGANALT 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1797316 1802269 - CmoCh18G002730.1 Cmo18g00273 402046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00273 918 PRINTS ATP synthase gamma subunit signature 760 779 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo18g00273 918 PRINTS ATP synthase gamma subunit signature 853 870 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo18g00273 918 MobiDBLite consensus disorder prediction 187 229 - -
Cmo18g00273 918 Gene3D ATP synthase, gamma subunit, helix hairpin domain 884 918 - -
Cmo18g00273 918 MobiDBLite consensus disorder prediction 204 229 - -
Cmo18g00273 918 MobiDBLite consensus disorder prediction 651 681 - -
Cmo18g00273 918 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 891 917 - -
Cmo18g00273 918 PANTHER ATP SYNTHASE GAMMA CHAIN 891 917 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo18g00273 918 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 688 871 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo18g00273 918 Gene3D - 756 882 - -
Cmo18g00273 918 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 871 891 - -
Cmo18g00273 918 PANTHER ATP SYNTHASE GAMMA CHAIN 871 891 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo18g00273 918 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 688 917 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cmo18g00273 918 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 662 870 - -
Cmo18g00273 918 PANTHER ATP SYNTHASE GAMMA CHAIN 662 870 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo18g00273 918 Gene3D ATP synthase, gamma subunit, helix hairpin domain 688 755 - -
Cmo18g00273 918 ProSitePatterns ATP synthase gamma subunit signature. 903 916 IPR023632 -
Cmo18g00273 918 CDD F1-ATPase_gamma 689 914 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo18g00273 918 MobiDBLite consensus disorder prediction 471 504 - -
Cmo18g00273 918 MobiDBLite consensus disorder prediction 189 203 - -
Cmo18g00273 918 Coils Coil 33 60 - -
Cmo18g00273 918 Pfam ATP synthase 689 877 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00898 Cmo-Chr16:5274939 Cmo18g00273 Cmo-Chr18:1797316 8.26E-74 dispersed
Cmo13g00771 Cmo-Chr13:7446276 Cmo18g00273 Cmo-Chr18:1797316 1.72E-14 wgd
Cmo18g00273 Cmo-Chr18:1797316 Cmo03g00560 Cmo-Chr3:5539010 1.29E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00273 - - bhj:120083101 964.911