Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00280 ATGGCGCTTCTCTATCGCCTCCGTCACGCTTTCCCGTCGAACGCGACTTACATCAATTATCGTCTTCATTACCGTTCTCTCTCGACAATCCTTTCCCCGGATTCCACCAATCCTTTGTCCGCGAAACAGAAATCGAGGGCCGCACTGTCTCTGCTGAAATCTGAGGACAATCCTGAGCGTATAATTGATATTTGCCGAGCTGCTACTCTCACTCCAGAATCACATCTCGATCGCATCGCTTTCTCAGTTGCTATTTCCAAGCTTTCAGAGTCCAAGCATTTCGATGGGATTCGCCGATTCCTCGAGGAATTGAAGTCTCGTCCCGACTTGAAAAACGAGCGTTTCGCTTGCCACGCTATTGTTCTCTATGGCCAGGCCAAAATGCTCGATCATGCTATCAGCACTTTTAAGCAAATTGATGAATTGGGCGCGCGTCAGTCGGTTAAATCGCTTAACGCATTGCTATTTGCATGCAATTTAGCTAAGGATTACAAGGAACTGAAGCGAGTTTTTATGGAGTTTCCTAAGGTTTATGGAATCGAACCAGATCTGGATACGTATAACAGAGTGATCAAGGCGTTTTCAGAGTCGGGATCGTCTAGTGCAGTGTATTCAATTCTGGCGGAGATGGACAGGAAGGATATCAAACCAAATGCTACCACTTTTGCGAACTGGCTTGCTGGATGCTACAAGGAAGAGAAGTACGAGGATGTTGAGAAGGTCATAAAATTGATGGAAAAATATGGCGTTCGGCGTGGAGTTAGTACATATAATGCAAGGATACAGAGTCTGTGTAAATTGAAGAGATCATCGGAGGCGAAGGCTTTGTTTGATGGGATGTTGTCGAGAGGTATGAAACCAAACTCTGTTACATATTGTGAATTGATTCATGGGTTTTGCAAGGAAGGAAATCTTGATGAAGCTAAGACCCTTTTCAAGAGAATGATGAATAGCGGTTGCCAACCAGATAGTGATTGCTATTTCACTTTGATTTACTTTCTTTGTCGAGGAGGAGATTATGATACAGCATTCAAGCTCTGTGGGCAAAGCATAGAGAAGGGTTGGTTTCCAAATATTACTACAATGAAGTCTCTTGTTGATGGGCTTGTTAGCATTTCGAAGGTCGATGAGGCGAAGCAACTCATTGGGCAAATCAAAGAGAGGTTCTCTAAGAATGTTGAAACGTGGAATGAAATTGAAGCTGGATTGCCTCAGTGA 1218 43.92 MALLYRLRHAFPSNATYINYRLHYRSLSTILSPDSTNPLSAKQKSRAALSLLKSEDNPERIIDICRAATLTPESHLDRIAFSVAISKLSESKHFDGIRRFLEELKSRPDLKNERFACHAIVLYGQAKMLDHAISTFKQIDELGARQSVKSLNALLFACNLAKDYKELKRVFMEFPKVYGIEPDLDTYNRVIKAFSESGSSSAVYSILAEMDRKDIKPNATTFANWLAGCYKEEKYEDVEKVIKLMEKYGVRRGVSTYNARIQSLCKLKRSSEAKALFDGMLSRGMKPNSVTYCELIHGFCKEGNLDEAKTLFKRMMNSGCQPDSDCYFTLIYFLCRGGDYDTAFKLCGQSIEKGWFPNITTMKSLVDGLVSISKVDEAKQLIGQIKERFSKNVETWNEIEAGLPQ 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1841308 1842525 + CmoCh18G002800.1 Cmo18g00280 402053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00280 405 Pfam PPR repeat 221 250 IPR002885 -
Cmo18g00280 405 Gene3D Tetratricopeptide repeat domain 21 159 IPR011990 GO:0005515
Cmo18g00280 405 Pfam Pentatricopeptide repeat domain 137 194 IPR002885 -
Cmo18g00280 405 Pfam PPR repeat 319 347 IPR002885 -
Cmo18g00280 405 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Cmo18g00280 405 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 1 393 - -
Cmo18g00280 405 TIGRFAM PPR: pentatricopeptide repeat domain 290 324 IPR002885 -
Cmo18g00280 405 TIGRFAM PPR: pentatricopeptide repeat domain 186 219 IPR002885 -
Cmo18g00280 405 TIGRFAM PPR: pentatricopeptide repeat domain 256 289 IPR002885 -
Cmo18g00280 405 TIGRFAM PPR: pentatricopeptide repeat domain 329 359 IPR002885 -
Cmo18g00280 405 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Cmo18g00280 405 Pfam PPR repeat family 253 301 IPR002885 -
Cmo18g00280 405 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Cmo18g00280 405 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Cmo18g00280 405 PANTHER OS01G0793200 PROTEIN 1 393 - -
Cmo18g00280 405 Gene3D Tetratricopeptide repeat domain 240 402 IPR011990 GO:0005515
Cmo18g00280 405 SUPERFAMILY TPR-like 77 394 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00280 - - - csv:101212082 726.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00282 Cmo-Chr7:1388286 Cmo18g00280 Cmo-Chr18:1841308 4.12E-09 dispersed
Cmo13g00755 Cmo-Chr13:7369393 Cmo18g00280 Cmo-Chr18:1841308 0 dispersed
Cmo16g00710 Cmo-Chr16:3546620 Cmo18g00280 Cmo-Chr18:1841308 1.01E-68 dispersed
Cmo18g00280 Cmo-Chr18:1841308 Cmo01g01330 Cmo-Chr1:10564770 6.17E-39 dispersed
Cmo18g00280 Cmo-Chr18:1841308 Cmo14g01371 Cmo-Chr14:11322490 4.48E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1056 . . . . . . . . . Cmo18g00280 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011460 0 1 0 0 1 1 2 1 1 1 1 1 1 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00280 Cmo_Chr18 FPKM 0.615784 0.933213 4.15187 3.47621 18.607359 17.466652 22.514574 1.95985 2.955748 2.567511