Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00297 ATGGAAGCGCTCAGAACCCAGATGGACCCCCCATCTCCTCCTCCGCCACCGCCGTCTAGTCCTCCTCCGCCTCCGTCGCCGCCGTCTAGTCCTCCTCCGCCTCCGCCGCCGCCGTCTAGTCCTCCTCCGCCTCCGTCGCCGCCGTCTAGTCCTCCTCCGCCTCCGCCGCCGTCTACTCCTCCTCCGCCGCTGCCGTCTCCTCCTCCTCCTCCGCCGCCGGGGGAAAGTAGATCCTCAATGATGATAATTGTGGCCATTGTGGTTCCAATTACAGTTACTGTCTCCATATTGCTGTTTGCTCTGAGCTGCTATTTCCTGCGACCAACAGCAAAGAAGAAATACAATGCTGTAAAGGAAGACAGTGTTATTGATGAGATGAGCACTGCTGAATCTCTGCAATTTGATTTCAATACAATCAACGCTGCTACTAGCAATTTCTCAGAGGAAAACAAGCTCGGTGAGGGCGGATTTGGTGCAGTCTACAAGGGTAGACTTGAGAATGGACAAGAGATAGCCGTGAAAAGATTATCAAGAAGATCTCTGCAAGGTTTTAAAGAGTTCAAGAATGAGATTACGTTGGTTGCTAAACTTCATCATAGAAACCTCGTAAGGTTATTGGGATTCTGCATGGAGGGTGAAGAAAAGATACTCATCTATGAATACATCCCCAATAAAAGCCTCGATTTTTTCTTATTTGATCCAATTAGACAAAAACAGCTGGATTGGTCCAAACGATATACAATTATCAACGGCATCGCTCGAGGAATTTTATATCTGCACGAAGATTCTCGTCTTCGAATTATTCATCGTGATCTGAAAGCAAGTAACATTTTGTTAGATGGGGATATGAATCCAAAAGTTTCGGATTTTGGTATGGCAAGAATTGTTCAAGTGGATCAAACTCAAGGAATTACCGATCGAATTGTCGGTACATACGGTTACATGTCTCCTGAGTATGCAATGTACGGAAACTTCTCCTTGAAATCTGACGTGTATAGCTTCGGAGTCTTAATCTTTGAAATTATAAGTGGCAAAAAAAATAACACCTTTTATTTGTCGAAACTTGCCGAAGACATGTTGACCTATGCTTGGAAACTATGGAAGAATGGAACATCCTTAGAGCTATTGGACCCAATACTTAGAGATAATTACTCAAGAAATGAAGTGCTTAGATGCATCCATATTGCTTTGTTATGCGTTCAGGAGAATCCCAGCCGTAGGCCTTCAATGACATCCTGA 1239 44.96 MEALRTQMDPPSPPPPPPSSPPPPPSPPSSPPPPPPPPSSPPPPPSPPSSPPPPPPPSTPPPPLPSPPPPPPPGESRSSMMIIVAIVVPITVTVSILLFALSCYFLRPTAKKKYNAVKEDSVIDEMSTAESLQFDFNTINAATSNFSEENKLGEGGFGAVYKGRLENGQEIAVKRLSRRSLQGFKEFKNEITLVAKLHHRNLVRLLGFCMEGEEKILIYEYIPNKSLDFFLFDPIRQKQLDWSKRYTIINGIARGILYLHEDSRLRIIHRDLKASNILLDGDMNPKVSDFGMARIVQVDQTQGITDRIVGTYGYMSPEYAMYGNFSLKSDVYSFGVLIFEIISGKKNNTFYLSKLAEDMLTYAWKLWKNGTSLELLDPILRDNYSRNEVLRCIHIALLCVQENPSRRPSMTS 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1926313 1929448 + CmoCh18G002970.1 Cmo18g00297 402070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00297 412 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 69 412 - -
Cmo18g00297 412 SUPERFAMILY Protein kinase-like (PK-like) 132 411 IPR011009 -
Cmo18g00297 412 Pfam Protein tyrosine and serine/threonine kinase 149 411 IPR001245 GO:0004672|GO:0006468
Cmo18g00297 412 SMART serkin_6 146 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00297 412 Gene3D Phosphorylase Kinase; domain 1 108 221 - -
Cmo18g00297 412 MobiDBLite consensus disorder prediction 1 75 - -
Cmo18g00297 412 Gene3D Transferase(Phosphotransferase) domain 1 222 412 - -
Cmo18g00297 412 PRINTS Proline rich extensin signature 27 43 - -
Cmo18g00297 412 PRINTS Proline rich extensin signature 6 27 - -
Cmo18g00297 412 PRINTS Proline rich extensin signature 44 61 - -
Cmo18g00297 412 ProSiteProfiles Protein kinase domain profile. 146 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00297 412 MobiDBLite consensus disorder prediction 8 75 - -
Cmo18g00297 412 SUPERFAMILY beta-sandwich domain of Sec23/24 13 77 - -
Cmo18g00297 412 ProSitePatterns Protein kinases ATP-binding region signature. 152 174 IPR017441 GO:0005524
Cmo18g00297 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Cmo18g00297 412 CDD STKc_IRAK 152 411 - -
Cmo18g00297 412 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 69 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00737 Cmo-Chr13:7301789 Cmo18g00297 Cmo-Chr18:1926313 1.32E-32 dispersed
Cmo13g00738 Cmo-Chr13:7302285 Cmo18g00297 Cmo-Chr18:1926313 5.01E-21 dispersed
Cmo18g00297 Cmo-Chr18:1926313 Cmo03g00542 Cmo-Chr3:5460624 4.66E-138 dispersed
Cmo18g00297 Cmo-Chr18:1926313 Cmo18g00298 Cmo-Chr18:1936525 9.62E-161 tandem
Cmo13g00735 Cmo-Chr13:7294508 Cmo18g00297 Cmo-Chr18:1926313 2.39E-144 wgd
Cmo18g00297 Cmo-Chr18:1926313 Cmo03g00538 Cmo-Chr3:5447627 4.11E-135 wgd
Cmo18g00297 Cmo-Chr18:1926313 Cmo07g00285 Cmo-Chr7:1395425 5.54E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75044 PF07714 PK_Tyr_Ser-Thr 9.40E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00297 - - cpep:111802150 570.081