Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00314 ATGACTCCCACCAGCAATCTCTTATCTTCCCTCTTTTTCTTCACACTCATACCTCTGTTTTCCAGAAACTCCATAGCAGACGATACCTTAAAACAAGGCCAATCCATTAACGATACCCAATCAATTGTCTCCGCCGCCGATATATTTGAATTGGGATTCTTCAGTCAACCCCAAGCCACTAATTTGAAGTATTTAGCAATATGGTACAAGGGCGTCGTTCCCAAAACTGTCGTTTGGGTGGCAAACAGAGATACCCCTGTTTTAAGCTCCTCTGCCACTTTAAACTTCAGAAGAGATGGAAATTTGGTTCTTATGAATCAAACAGGCGCAGCTTTTTGGTCGTCAAATTCGAAAAAATCACTTCAAAATCCAATAGCCCAGCTGCTCGACACTGGAAATCTGGTTTTGAGAGATTCGAAATCAGAAGATTATGTGTGGCAGAGTTTTGATTATCCGACTGATACTCTGTTACCGGGTATGAAAATCGGGTGGGACTCCAAAACGGGTTTGAATCGAAAGCTAAAATCATGGACAAGTTCAAACGATGTATCGTCGGGGGAATTCAGTTTTAGCCTCAACACAAATGGGCTTCCTCAATTCTTTGTTCATAAAGGAAACAGAACAATGTTTAGAGGTTGGCCTTGGTTCGATCATGATTTTGGGCAGAGTTACGGTAATGGGTTCAATTACGATCTTGTCTTTGATGCTTCAACAGAGATATCCTTTTCATATAACGATTCAGCGCACAGCCGTACGAGAATTGTGATGGATTCAAGTGGGTCAATTCTTCGGCATGAATGGAACGATGTGGGAGAAAAATGGCGCAAAGCATACTCATTTGATGGAGCTGGCTGCAATGACTACGATTTGTGTGGGAATTTTGGTCTCTGTAATCCCGCAGTGACAACAAGTTGTGGTTGTTTATATGGGTTTGAACAAATCTCAGCACAAAACTTGTCAAATGGGTGCGTGAGAAGGGATCCAAAGATCTGCGAAGCTGGAGATGGGTTTATAAAGATAAGCAAAGTGAAATGGCCTGATTCTACAGGGGATTCGGTGAAAATGAAACTGGGTGTTAAAGATTGTGAGGCAGAGTGCTTGAAGGATTGCGGTTGTTTAGCGTATGGAACAGTGCAAATTCCTAAAATTGGGCTTGCCTGTGTCAATTGGTTTCACAAATTGGTTGATATTCGTTATGTTCCTGATGTTGGGTCGGGAGATGATATCTATGTGAGAGTTGCTGCTTCAGAATTAGAATCGGCTGATGAAAAGCGTAGTGTTGCAGTGGTTGTTGCTGTGCCGATTGTATCAGTGATGGTCTTTTTGGGTTTGATTGGCAGTTGGATTTTCATTAGGAGAAGAGCTAGAGGTAACCATGAAGTTCTAATAGTTCCTCCAATTCAAGAACATGAACTAGAGATACCCATTGGCGTTCTTGAGGCAGCTACTGAAAATTTCTCTGTTTCTAATAAGATAGGAGAGGGTGGTTTTGGATCAGTTTACAAGGGAAAGCTTCCAAATGGGCAAGAAATTGCAGTAAAAAAGCTAGCAGAAACATCAGGTCAAGGGTTGCTGGAGTTCAAAAACGAGGTCCTTTTCATTTCTCAGCTTCAACATCGAAATCTTGTCAAGCTTCTTGGTTTTTGCATCCACAATGAACAAATTTTACTCATTTATGAGTATTTGCCTAACAAAAGTTTGGATTGTTTCATATTTGATGATCAAAGACGTTCGTCGCTCACTTGGCCAAGAAGAATCGATATCATAATTGGCATAGCTCGAGGACTTCTGTATCTCCATCGAGATTCAAGGCTTCGAATCATACATAGAGATCTTAAAGCTGCTAATATTTTGTTAGACAATGAAATGAAACCGAAGATTTCTGACTTTGGTATGGCACGTATGTTTCGCGAAGATCAAACCGAAACAAAAACGAGAAGAATTGTTGGAACTTATGGTTACATGTCTCCTGAATATGTTATAGACGGTTATTTTTCAGTGAAGTCTGATGTTTTTAGCTTTGGAGTGATGGTTCTAGAAATCGTTAGCGGTAAGAAGAACAAAGGGTTTTTTCATCCCGAGCATCAACTCAATCTTCTTGGACATGCATGGAATCTTTGGAAGGAAGGAAGGAGCTTGGAATTAATAGATGTAATATTGGAGGATCAATTTGATGAACATGAAGCTTTGAGATATATAAATATTGGGTTGTTGTGTGTTCAAAGACGTCCAGAAGACAGGCCAATCATGTCGGGTGTGGTATCCATGTTGGAGAATGAGAACCTGAGATTAATGGTTCCTGAACGACCTGGGTTCTATGAGGAAAGGTGCAAGCTTTCATCTTTTCTCTTTTTCTCGACGATCATTGCTCTGTTTTCAACAAAATCGTTAGCAATCGATAGCATAAAAGCAGGGGAATCCATCAATGGCAGTACCCAGATGTTAATTTCACCTGCAAAGAAGTTCGTGTTGGGAATCTTCAATCCCCAGGGCTCCAAATTTCATTACTTGGGCATATGGTACAACAACATCCCACAAACTGTCGTGTGGGTCGCAAACAGAGACAACCCACTTGTGAATTCCTCTGCTCATTTAGTATTCAAAGGAGAAAACATTGTTCTTCTCAACCAAACAGGTGGGATTTTATGGACTTCCAATTCTCCACGATCATTGAAAGAACGAGAGGTTCAGCTGTTAGATACAGGAAATTTGGTTTTAAGAGAAACAGGGTCTCAAGATTATGCGTGGCAGAGCTTCGATTACCCGTCTGATACTCTGTTACCTGGGATGAAACTGGGTTGGGATTCAAAAACCGGCCTGAACCGGAAGTTAACGTCTTGGAAAAACCCAAATGATCCATCGTCTGGGGATTACACATACGGTGTGGAAATGGATGGGCTTCCACAACTTGTAGTTCGTAAAGGGCCCATCATAACGTTTCGGGGCGGCCCATGGTATGGTAAAAGGTTTAGTGGAAGTGGGGATCTCAGAGCAACAGCAATTTATGCGCCGAAGTTTGATTATAATGGTGATGAACACAGAGCGCTGTTTTCGTATGAGGCGAGGAACAATTTCTCTGTAAGATTGGTGCTGGGCGCGGCGGGGTTATTTCAGCAGCTGTATTGGGTGGAAGATGGAGAATATTGGTATCCATTGTATACATTGCCTGGAGATGGATGCGATGTGTACGGAATATGTGGGGAATTTGGTGTTTGTACGTTTTCACTCACAGCAGAATGTGATTGTATGGATGGGTTTGAACCCAAATGGCCTGATGATTGGGAAATGTTTAGGCGTTCTGGTGGATGTGTTAGAAAGGACAATCGAACTTGTGGAAATGGCGAGGGGTTTAAACGAATTAGTAGTGTGAAATTTCCAGATTCTTCAGGGTATTTTGTGAATGTTAATATGAGCATTCAAGACTGTGAGGCGGCGTGTTTGAACAACTGTTCTTGCTTGGCTTATGGAATAATGGAGCTTCCAAATGGCGGGTATGGCTGTGTTACCTGGTTCCATAAACTTATGGATGTTAAATTTGTTGTTTATAATGGACAGGATCTCTATGTCAGAGTGGCTGCTTCAGAATTAGATTCAACCAACAAGAAACTTAAGGTAGCAGTCAGTGTGTCTGTGGCTTCATTTCTAGGCTTCTTGGGCTTTGTCATTTGCTTTATTCTTGGGCGTAGAAGAAAAGATAGAGGTAATGTGATCACTCCTGAGATCACTGCAGGTGAGATTCTAGCTCAAGAAAATGATGTTGAGATGCCAATCTATGATCTTACAACGATCGAGGCTGCCACGGATAATTTCTCTTTCTCGAATAAGATTGGTGAAGGCGGGTTTGGTCCTGTTTACAAGGGTAAGCTTCCATGTGGACAAGAGATTGCAATAAAGAGGCTGGCAGGGGGCTCTGGCCAAGGGCAAAACGAGTTTAAAAATGAGGTTACGTTGATATCCCAACTTCAACATCGAAATCTTGTCAAGCTTCTTGGTTTTTGCATTCATAAGGAAGAAACATTACTAGTTTATGAATATATGCCAAACAAAAGCTTAGACCACTTCCTCTTCGATAACGAGAAGAGATATTCACTCAATTGGCAGAAGAGATTCGACATCATAATCGGGATATCTCGAGGACTTCTTTATCTCCACAGAGACTCGAGGCTAAGAATAATACATAGAGATCTCAAAGTAAGTAATATATTACTCGACAGTGAAATGAATCCGAAAATTTCAGACTTTGGCATGGCACGTATGTTTGGCGAAGATCAAACTACGGCAAAAACTAAAAGAGTTGTCGGTACTTATGGCTATATGTCTCCAGAATATGCACTCGATGGATGTTTTTCATTGAAGTCTGACGTGTTTAGCTTCGGGGTCATTCTTTTGGAGATAGTTAGCGGTAAGAAGAATAGAGGGTTCTTCCATACCGATCATCAACTTAATCTTCTCGGACATGCATGGAAGCTTTGGGATGAAGGAAATGCTTTGGAGTTGATGGATACAGCATTGGAGAACAAATTCCAACCTTCTGAAGCACTACGATGCATTCAAATAGGCCTTTTGTGTGTTCAGCTGAGCCCTGATGACAGACCAACTATGTGGTCGGTGCTTTCAATGTTGGAGAGTGAAAACATGCTGTCTTATCCTAAACAACCTGGGTTTTACACAGAGAGAATGTTTTCTAGGACTGATAAATCATTAGCTGAAGCCTCTACTTCCAATGAAGTGACAGTTACTTTGGTACATGGTCGTTAG 4758 41.45 MTPTSNLLSSLFFFTLIPLFSRNSIADDTLKQGQSINDTQSIVSAADIFELGFFSQPQATNLKYLAIWYKGVVPKTVVWVANRDTPVLSSSATLNFRRDGNLVLMNQTGAAFWSSNSKKSLQNPIAQLLDTGNLVLRDSKSEDYVWQSFDYPTDTLLPGMKIGWDSKTGLNRKLKSWTSSNDVSSGEFSFSLNTNGLPQFFVHKGNRTMFRGWPWFDHDFGQSYGNGFNYDLVFDASTEISFSYNDSAHSRTRIVMDSSGSILRHEWNDVGEKWRKAYSFDGAGCNDYDLCGNFGLCNPAVTTSCGCLYGFEQISAQNLSNGCVRRDPKICEAGDGFIKISKVKWPDSTGDSVKMKLGVKDCEAECLKDCGCLAYGTVQIPKIGLACVNWFHKLVDIRYVPDVGSGDDIYVRVAASELESADEKRSVAVVVAVPIVSVMVFLGLIGSWIFIRRRARGNHEVLIVPPIQEHELEIPIGVLEAATENFSVSNKIGEGGFGSVYKGKLPNGQEIAVKKLAETSGQGLLEFKNEVLFISQLQHRNLVKLLGFCIHNEQILLIYEYLPNKSLDCFIFDDQRRSSLTWPRRIDIIIGIARGLLYLHRDSRLRIIHRDLKAANILLDNEMKPKISDFGMARMFREDQTETKTRRIVGTYGYMSPEYVIDGYFSVKSDVFSFGVMVLEIVSGKKNKGFFHPEHQLNLLGHAWNLWKEGRSLELIDVILEDQFDEHEALRYINIGLLCVQRRPEDRPIMSGVVSMLENENLRLMVPERPGFYEERCKLSSFLFFSTIIALFSTKSLAIDSIKAGESINGSTQMLISPAKKFVLGIFNPQGSKFHYLGIWYNNIPQTVVWVANRDNPLVNSSAHLVFKGENIVLLNQTGGILWTSNSPRSLKEREVQLLDTGNLVLRETGSQDYAWQSFDYPSDTLLPGMKLGWDSKTGLNRKLTSWKNPNDPSSGDYTYGVEMDGLPQLVVRKGPIITFRGGPWYGKRFSGSGDLRATAIYAPKFDYNGDEHRALFSYEARNNFSVRLVLGAAGLFQQLYWVEDGEYWYPLYTLPGDGCDVYGICGEFGVCTFSLTAECDCMDGFEPKWPDDWEMFRRSGGCVRKDNRTCGNGEGFKRISSVKFPDSSGYFVNVNMSIQDCEAACLNNCSCLAYGIMELPNGGYGCVTWFHKLMDVKFVVYNGQDLYVRVAASELDSTNKKLKVAVSVSVASFLGFLGFVICFILGRRRKDRGNVITPEITAGEILAQENDVEMPIYDLTTIEAATDNFSFSNKIGEGGFGPVYKGKLPCGQEIAIKRLAGGSGQGQNEFKNEVTLISQLQHRNLVKLLGFCIHKEETLLVYEYMPNKSLDHFLFDNEKRYSLNWQKRFDIIIGISRGLLYLHRDSRLRIIHRDLKVSNILLDSEMNPKISDFGMARMFGEDQTTAKTKRVVGTYGYMSPEYALDGCFSLKSDVFSFGVILLEIVSGKKNRGFFHTDHQLNLLGHAWKLWDEGNALELMDTALENKFQPSEALRCIQIGLLCVQLSPDDRPTMWSVLSMLESENMLSYPKQPGFYTERMFSRTDKSLAEASTSNEVTVTLVHGR 1585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2010095 2020612 - CmoCh18G003140.1 Cmo18g00314 402087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00314 1585 ProSiteProfiles Bulb-type lectin domain profile. 799 919 IPR001480 -
Cmo18g00314 1585 CDD STKc_IRAK 492 759 - -
Cmo18g00314 1585 ProSiteProfiles Bulb-type lectin domain profile. 27 149 IPR001480 -
Cmo18g00314 1585 Pfam Protein tyrosine and serine/threonine kinase 1271 1540 IPR001245 GO:0004672|GO:0006468
Cmo18g00314 1585 Pfam Protein tyrosine and serine/threonine kinase 488 755 IPR001245 GO:0004672|GO:0006468
Cmo18g00314 1585 Pfam D-mannose binding lectin 847 948 IPR001480 -
Cmo18g00314 1585 Pfam D-mannose binding lectin 76 177 IPR001480 -
Cmo18g00314 1585 Pfam PAN-like domain 1111 1177 IPR003609 -
Cmo18g00314 1585 Pfam PAN-like domain 331 397 IPR003609 -
Cmo18g00314 1585 ProSiteProfiles Protein kinase domain profile. 486 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00314 1585 ProSiteProfiles PAN/Apple domain profile. 1111 1192 IPR003609 -
Cmo18g00314 1585 CDD B_lectin 808 922 IPR001480 -
Cmo18g00314 1585 CDD STKc_IRAK 1276 1542 - -
Cmo18g00314 1585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1391 1403 IPR008271 GO:0004672|GO:0006468
Cmo18g00314 1585 ProSiteProfiles PAN/Apple domain profile. 331 414 IPR003609 -
Cmo18g00314 1585 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 791 1583 - -
Cmo18g00314 1585 SMART serkin_6 486 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00314 1585 SMART serkin_6 1270 1541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00314 1585 Gene3D Transferase(Phosphotransferase) domain 1 562 766 - -
Cmo18g00314 1585 Gene3D Transferase(Phosphotransferase) domain 1 1346 1552 - -
Cmo18g00314 1585 Gene3D Phosphorylase Kinase; domain 1 1240 1345 - -
Cmo18g00314 1585 Gene3D Phosphorylase Kinase; domain 1 450 561 - -
Cmo18g00314 1585 SUPERFAMILY alpha-D-mannose-specific plant lectins 848 953 IPR036426 -
Cmo18g00314 1585 CDD PAN_AP_plant 1108 1192 - -
Cmo18g00314 1585 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 182 IPR036426 -
Cmo18g00314 1585 SUPERFAMILY Protein kinase-like (PK-like) 1253 1574 IPR011009 -
Cmo18g00314 1585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Cmo18g00314 1585 SMART ntp_6 1112 1191 IPR003609 -
Cmo18g00314 1585 SMART ntp_6 332 413 IPR003609 -
Cmo18g00314 1585 ProSiteProfiles Protein kinase domain profile. 1270 1547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00314 1585 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 777 - -
Cmo18g00314 1585 Gene3D - 22 149 IPR036426 -
Cmo18g00314 1585 Gene3D - 795 919 IPR036426 -
Cmo18g00314 1585 ProSitePatterns Protein kinases ATP-binding region signature. 492 515 IPR017441 GO:0005524
Cmo18g00314 1585 Pfam S-locus glycoprotein domain 980 1089 IPR000858 GO:0048544
Cmo18g00314 1585 Pfam S-locus glycoprotein domain 209 313 IPR000858 GO:0048544
Cmo18g00314 1585 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 18 777 - -
Cmo18g00314 1585 CDD B_lectin 34 152 IPR001480 -
Cmo18g00314 1585 CDD PAN_AP_plant 328 414 - -
Cmo18g00314 1585 SMART blect_4 33 152 IPR001480 -
Cmo18g00314 1585 SMART blect_4 806 922 IPR001480 -
Cmo18g00314 1585 SUPERFAMILY Protein kinase-like (PK-like) 473 787 IPR011009 -
Cmo18g00314 1585 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 791 1583 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00631 Cmo-Chr8:3836941 Cmo18g00314 Cmo-Chr18:2010095 2.59E-136 dispersed
Cmo13g00714 Cmo-Chr13:7197589 Cmo18g00314 Cmo-Chr18:2010095 7.41E-75 dispersed
Cmo13g00715 Cmo-Chr13:7204480 Cmo18g00314 Cmo-Chr18:2010095 0 dispersed
Cmo13g00716 Cmo-Chr13:7210209 Cmo18g00314 Cmo-Chr18:2010095 0 dispersed
Cmo16g00870 Cmo-Chr16:4644745 Cmo18g00314 Cmo-Chr18:2010095 0 dispersed
Cmo16g00871 Cmo-Chr16:4667379 Cmo18g00314 Cmo-Chr18:2010095 5.64E-16 dispersed
Cmo18g00314 Cmo-Chr18:2010095 Cmo13g00711 Cmo-Chr13:7190230 0 dispersed
Cmo20g00597 Cmo-Chr20:2936558 Cmo18g00314 Cmo-Chr18:2010095 1.04E-24 dispersed
Cmo09g00811 Cmo-Chr9:4171305 Cmo18g00314 Cmo-Chr18:2010095 5.13E-15 transposed
Cmo01g01224 Cmo-Chr1:9834744 Cmo18g00314 Cmo-Chr18:2010095 0 wgd
Cmo18g00314 Cmo-Chr18:2010095 Cmo03g00525 Cmo-Chr3:5400189 5.69E-169 wgd
Cmo18g00314 Cmo-Chr18:2010095 Cmo07g00278 Cmo-Chr7:1365082 3.60E-154 wgd
Cmo18g00314 Cmo-Chr18:2010095 Cmo09g00901 Cmo-Chr9:4698818 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75046 PF07714 PK_Tyr_Ser-Thr 1.30E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00314 - - bhj:120084118 2109.34