Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00322 ATGAATGATTTATTCTCCAATTCCTTCAAAAAATACACTGATCTGAAGGAACAGGCGTTTCTGGACAGCATGGAGCCTGGGAATGAGAGTGTGAATTTGGACAAATTCTTTGAGGAGGTTGAGAATGTTAAGGATGACATGAAACAGGTGGAGAGTTTGTACAAGAAATTGCAGCAGGACAATGAGGAGTGTAAGATTGTACATAATGCTAAGACTATGAAGGAGCTGAGGTCTAGAATGGAGGGCGATGTGGGTCTGGTTTTAAAGCGTGTTAAAATGATCAAAGGGAAGCTTGAGGCTCTTGAGCGTTCTAATGCTGCTCATCGGAACCTCCCTGGCTGTGGCCCTGGCTCCTCTGCTGATCGTACCAGAACCTCTGTTGTTAGCGGCTTGGGAAAGAAGCTTAAGGATGTTATGGATGATTTTCAAGGGCTTAGAGCTCGAATGAACGCCGAGTACAAAGAAACCGTCGAGCGCAGGTACTTCACAGTGACAGGGCAGAAGGCAGACGAAGAGACAATAGAGAATTTGATATCAAGTGGGGAAAGCGAGAGCTTCCTTCAGAAAGCAATTCAAGAACAGGGTAGAGGTCAAATAATGGATACCATTTCAGAGATTCAAGAACGACACGACGCAGTGAAGGAGATCGAGAAGAATCTGCTTGAGCTACATCAGATATTCTTGGACATGGCAGCACTGGTGGAGGCCCAGGGACACCAGCTGAATGACATCGAAAGCCATGTGGCTCATGCCAACTCCTTTGTTAGAAGAGGAACAGAGCAACTCCAAGAAGCTCGGGAGTATCAGAAAAGCTCAAGGAAATGGACTTGCTATGCCGTCATATTGGGTATCGTTCTACTCATCATTCTTCTGCTACCAATATTGAATGTCATTTTGCCTCATTTGTTGTAG 912 45.18 MNDLFSNSFKKYTDLKEQAFLDSMEPGNESVNLDKFFEEVENVKDDMKQVESLYKKLQQDNEECKIVHNAKTMKELRSRMEGDVGLVLKRVKMIKGKLEALERSNAAHRNLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKADEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAVILGIVLLIILLLPILNVILPHLL 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2085688 2087782 + CmoCh18G003220.1 Cmo18g00322 402095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00322 303 SMART SynN_4 28 154 IPR006011 GO:0016020
Cmo18g00322 303 CDD SNARE_syntaxin1-like 202 264 - -
Cmo18g00322 303 PANTHER SYNTAXIN 6 294 IPR045242 -
Cmo18g00322 303 Pfam SNARE domain 240 291 IPR000727 -
Cmo18g00322 303 CDD SynN 33 190 IPR006011 GO:0016020
Cmo18g00322 303 PANTHER SYNTAXIN-124-RELATED 6 294 - -
Cmo18g00322 303 SMART tSNARE_6 198 265 IPR000727 -
Cmo18g00322 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cmo18g00322 303 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Cmo18g00322 303 Coils Coil 33 67 - -
Cmo18g00322 303 Gene3D - 33 160 - -
Cmo18g00322 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Cmo18g00322 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Cmo18g00322 303 Gene3D - 193 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00363 Cmo-Chr14:1665244 Cmo18g00322 Cmo-Chr18:2085688 4.03E-112 dispersed
Cmo14g01110 Cmo-Chr14:7488054 Cmo18g00322 Cmo-Chr18:2085688 1.65E-90 dispersed
Cmo18g00322 Cmo-Chr18:2085688 Cmo20g00615 Cmo-Chr20:3011939 3.38E-72 dispersed
Cmo13g00695 Cmo-Chr13:7115501 Cmo18g00322 Cmo-Chr18:2085688 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00322 K08486 - csv:101217140 521.546