Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00322 | ATGAATGATTTATTCTCCAATTCCTTCAAAAAATACACTGATCTGAAGGAACAGGCGTTTCTGGACAGCATGGAGCCTGGGAATGAGAGTGTGAATTTGGACAAATTCTTTGAGGAGGTTGAGAATGTTAAGGATGACATGAAACAGGTGGAGAGTTTGTACAAGAAATTGCAGCAGGACAATGAGGAGTGTAAGATTGTACATAATGCTAAGACTATGAAGGAGCTGAGGTCTAGAATGGAGGGCGATGTGGGTCTGGTTTTAAAGCGTGTTAAAATGATCAAAGGGAAGCTTGAGGCTCTTGAGCGTTCTAATGCTGCTCATCGGAACCTCCCTGGCTGTGGCCCTGGCTCCTCTGCTGATCGTACCAGAACCTCTGTTGTTAGCGGCTTGGGAAAGAAGCTTAAGGATGTTATGGATGATTTTCAAGGGCTTAGAGCTCGAATGAACGCCGAGTACAAAGAAACCGTCGAGCGCAGGTACTTCACAGTGACAGGGCAGAAGGCAGACGAAGAGACAATAGAGAATTTGATATCAAGTGGGGAAAGCGAGAGCTTCCTTCAGAAAGCAATTCAAGAACAGGGTAGAGGTCAAATAATGGATACCATTTCAGAGATTCAAGAACGACACGACGCAGTGAAGGAGATCGAGAAGAATCTGCTTGAGCTACATCAGATATTCTTGGACATGGCAGCACTGGTGGAGGCCCAGGGACACCAGCTGAATGACATCGAAAGCCATGTGGCTCATGCCAACTCCTTTGTTAGAAGAGGAACAGAGCAACTCCAAGAAGCTCGGGAGTATCAGAAAAGCTCAAGGAAATGGACTTGCTATGCCGTCATATTGGGTATCGTTCTACTCATCATTCTTCTGCTACCAATATTGAATGTCATTTTGCCTCATTTGTTGTAG | 912 | 45.18 | MNDLFSNSFKKYTDLKEQAFLDSMEPGNESVNLDKFFEEVENVKDDMKQVESLYKKLQQDNEECKIVHNAKTMKELRSRMEGDVGLVLKRVKMIKGKLEALERSNAAHRNLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKADEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAVILGIVLLIILLLPILNVILPHLL | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 2085688 | 2087782 | + | CmoCh18G003220.1 | Cmo18g00322 | 402095 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00322 | 303 | SMART | SynN_4 | 28 | 154 | IPR006011 | GO:0016020 | |
Cmo18g00322 | 303 | CDD | SNARE_syntaxin1-like | 202 | 264 | - | - | |
Cmo18g00322 | 303 | PANTHER | SYNTAXIN | 6 | 294 | IPR045242 | - | |
Cmo18g00322 | 303 | Pfam | SNARE domain | 240 | 291 | IPR000727 | - | |
Cmo18g00322 | 303 | CDD | SynN | 33 | 190 | IPR006011 | GO:0016020 | |
Cmo18g00322 | 303 | PANTHER | SYNTAXIN-124-RELATED | 6 | 294 | - | - | |
Cmo18g00322 | 303 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - | |
Cmo18g00322 | 303 | ProSitePatterns | Syntaxin / epimorphin family signature. | 209 | 248 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cmo18g00322 | 303 | Pfam | Syntaxin | 35 | 238 | IPR006011 | GO:0016020 | |
Cmo18g00322 | 303 | Coils | Coil | 33 | 67 | - | - | |
Cmo18g00322 | 303 | Gene3D | - | 33 | 160 | - | - | |
Cmo18g00322 | 303 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - | |
Cmo18g00322 | 303 | SUPERFAMILY | t-snare proteins | 32 | 258 | IPR010989 | GO:0016020|GO:0016192 | |
Cmo18g00322 | 303 | Gene3D | - | 193 | 298 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo14g00363 | Cmo-Chr14:1665244 | Cmo18g00322 | Cmo-Chr18:2085688 | 4.03E-112 | dispersed | |
Cmo14g01110 | Cmo-Chr14:7488054 | Cmo18g00322 | Cmo-Chr18:2085688 | 1.65E-90 | dispersed | |
Cmo18g00322 | Cmo-Chr18:2085688 | Cmo20g00615 | Cmo-Chr20:3011939 | 3.38E-72 | dispersed | |
Cmo13g00695 | Cmo-Chr13:7115501 | Cmo18g00322 | Cmo-Chr18:2085688 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00322 | K08486 | - | csv:101217140 | 521.546 |