Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00348 ATGGCGGCTCTGAAACTCCCAATTCTTCTCCACTTCTTCTCCCTTCTTTTCTTCTCCATCTCCGCCGTCGATTTCGTCTTCAATGGCTTCAATTCCACCGATCTCTTCCTCTACGGCAACGCCACCGTCGAATCCTCTGTTCTTGCGCTCACAAACCAAACCAGTTTCTCAATCGGCCGCGCTCTGTACCCATCCAAAATCCCCACGAGAATCTCCAATTCCTCAACGGTTTTCCCTTTCTCCACTTCTTTCATCTTCGCCATGGCTCCTTTCAAGGATCTCCTCCCCGGTCATGGCTTCGTTTTCATCTTCGTTCCGGCCACCGGAATCTCCGGCACGGCCTCTGCTCAGAATTTAGGGTTTTTGAACTTCACGCTCAATGGAAACCCTAATAACCATGTTTTTGGAATTGAATTCGATGTGTTTGCTAATCCGGAATTCAATGATCCCGATGATAATCATGTCGGAATTAATTTGAATTCCTTGACCTCTAATTTCACCGGAGTTGCTGGGTTTTGGTCGGACGGCGGCTCGTTCAGTAGTTTCCGGCTTAATAGCGGCGGAAACTACCAAGTCTGGGTTGATTATTCCGATTTTGAGATGAACGTTACGATGGCTCCGGCGGGGATGAAAAAGCCACGGCGGCCGTTGATTAACGCCTCCCTGAATCTCTCGGAGATTTTCTTAGACGAAATGTACGTGGGGTTCACGAGCGCCACCGGCCAGTTAGTTCAAGGTCACAACATCTTAGCTTGGAGTTTTAGCAACTCTAATTTTTCATTGAGTGAGAGTTTGGTTACCATTGGATTGCCCTCCTTCATTCTCCCAAAAGACCCATTTACAAAGTCGAAATGGTTCATCGCCACCGTGACGGTTGGCGGATTTCTAGTTCTTTGTTTTATCGTTGGGACTTTGGGGATTTTGATCGCCGACCACCGGAGGAGAGCGAGGGCGAGAGCTGAAATAGAGGATTGGGAATTTGAATATTGGCCGCATCGAATCACATATCAAGAAATTGAATCAGCGACAAAAGGATTTGGTGAAGAAAATGTGATCGGAATTGGAGGGAACGGGAAAGTTCATAAAGGGGTTTTGGCCGGAGGAGGTTTAGAAGTTGCAGTGAAGCGAATTTCTCATGAAAACGACGGAATGCGAGAGTTCATATCTGAAATCACGAGCATAGGGAGATTGAAGCATAGGAATCTTGTTAGTTTGAGAGGTTGGTGTAAGAAAGAGAAGGGAAATTTCTTACTGGTTTACGATTACATGGAAAATGGAAGCTTAGACAAATGGATATTCGATTGCGACGAGACAAACATGTTGAGCTACGATGATCGAATCAGAATATTGAAAAACGTAGCCTCAGGGGTGTTGTATTTACACGAAGGATGGGAATCAAAAGTTCTTCACAGGGACATAAAAGCGAGCAATGTGTTACTAGACAAGGACAAGAATGGAAGGCTAGGAGATTTTGGGTTGGCTCGAGTCCACAGCCATGGCCAAGTGGCTAGCACGACTAGGGTTGTTGGGACGATGGGTTACATTGCACCTGAGTTGGTTCGGAGCGGACAAGCCTCAGCTCAATCAGACGTATTTAGTTTTGGTATCTTGATTCTAGAAGTGATGTGTGGGAGGAGACCAATTGAGGAAGGAAAGCCATTGTTACTAGATTGGGTTCGACGGTTGGACGTCGAAGGGGAGTTGACTGCAGCACTCGATGGGAGGTTGAGGAAGAAGGGCGGGTGGAATGAGGAGGAAGTGAAGAGAGTGTTGCATTTGGGATTGTTGTGTGCACACGTTAACCCGAACGCTCGACCGACGATGAGGCAAATAGTGAAAATTTTGGAAGGGAAGGTCAAGTTGGATGAGAATGAGAGTATAAACGCTTATTTGGTTCAAAGATTGAAATCACCCGGAATGTGGTGTGATTCAAGCGTTGGTTTTGGGCATACATTGCATCATCCAACTTTTGAGGATTTTCTTCACTCTTCTTCAACTTCCCTCTCTTGGTCTGCTTCGATCGTCGCTTCCGCTTCCAGGTGA 2043 46.45 MAALKLPILLHFFSLLFFSISAVDFVFNGFNSTDLFLYGNATVESSVLALTNQTSFSIGRALYPSKIPTRISNSSTVFPFSTSFIFAMAPFKDLLPGHGFVFIFVPATGISGTASAQNLGFLNFTLNGNPNNHVFGIEFDVFANPEFNDPDDNHVGINLNSLTSNFTGVAGFWSDGGSFSSFRLNSGGNYQVWVDYSDFEMNVTMAPAGMKKPRRPLINASLNLSEIFLDEMYVGFTSATGQLVQGHNILAWSFSNSNFSLSESLVTIGLPSFILPKDPFTKSKWFIATVTVGGFLVLCFIVGTLGILIADHRRRARARAEIEDWEFEYWPHRITYQEIESATKGFGEENVIGIGGNGKVHKGVLAGGGLEVAVKRISHENDGMREFISEITSIGRLKHRNLVSLRGWCKKEKGNFLLVYDYMENGSLDKWIFDCDETNMLSYDDRIRILKNVASGVLYLHEGWESKVLHRDIKASNVLLDKDKNGRLGDFGLARVHSHGQVASTTRVVGTMGYIAPELVRSGQASAQSDVFSFGILILEVMCGRRPIEEGKPLLLDWVRRLDVEGELTAALDGRLRKKGGWNEEEVKRVLHLGLLCAHVNPNARPTMRQIVKILEGKVKLDENESINAYLVQRLKSPGMWCDSSVGFGHTLHHPTFEDFLHSSSTSLSWSASIVASASR 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2278900 2280942 + CmoCh18G003480.1 Cmo18g00348 402121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00348 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Cmo18g00348 680 CDD lectin_legume_LecRK_Arcelin_ConA 23 252 IPR001220 GO:0030246
Cmo18g00348 680 Gene3D Transferase(Phosphotransferase) domain 1 423 634 - -
Cmo18g00348 680 ProSiteProfiles Protein kinase domain profile. 346 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00348 680 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 15 671 - -
Cmo18g00348 680 PANTHER - 15 671 - -
Cmo18g00348 680 CDD STKc_IRAK 352 617 - -
Cmo18g00348 680 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 262 IPR013320 -
Cmo18g00348 680 Pfam Legume lectin domain 23 258 IPR001220 GO:0030246
Cmo18g00348 680 Pfam Protein kinase domain 348 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00348 680 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Cmo18g00348 680 SMART serkin_6 346 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00348 680 SUPERFAMILY Protein kinase-like (PK-like) 323 616 IPR011009 -
Cmo18g00348 680 Gene3D - 21 264 - -
Cmo18g00348 680 Gene3D Phosphorylase Kinase; domain 1 308 422 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00121 Cmo-Chr14:539127 Cmo18g00348 Cmo-Chr18:2278900 5.89E-160 dispersed
Cmo14g00123 Cmo-Chr14:542648 Cmo18g00348 Cmo-Chr18:2278900 1.13E-162 dispersed
Cmo18g00348 Cmo-Chr18:2278900 Cmo03g00426 Cmo-Chr3:4932837 1.86E-162 dispersed
Cmo11g01960 Cmo-Chr11:13491556 Cmo18g00348 Cmo-Chr18:2278900 0 wgd
Cmo13g00661 Cmo-Chr13:6954194 Cmo18g00348 Cmo-Chr18:2278900 0 wgd
Cmo18g00348 Cmo-Chr18:2278900 Cmo19g01029 Cmo-Chr19:9010459 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75050 PF00069 Pkinase 2.90E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00348 - - csv:101222577 1053.12