Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00354 ATGGAGGAAGATCCTAATTCTTGGTTAAGAAGAACCAAGTTTTCCCACACAATTTGCTACCGTTTAGAGTCCTTAAGATTGCCTTCCTTTCCTATCACAGCTCCTTCTCATCCTAAATCTACCCTTAACAAGCAGAGGTCTCTATCTCCACCTTCACAAACTACACTCTTAAGCACATTTAAGGATGCACGTAATGATTCGAAGCGATTTTCAACTCCGCAACCTTGTAGACGAGAGCCGAGAGAAGAGAAGGGTAAAAGGGTATTCAATAAAGAAGCTAAGGTGCATAATTCCTCAGAGGAAGAGAAGTTAAGAAGCCCTGTAAGGCATCTTGCATCATTTAAAGGCAATGAGAGATCCACGTTCATGAAGGAGGGTTCTTGGACCAAATTGTTTGAACACAAAAGAGGGAAGGTCACTGCTGTTGATGCTGTTGATGAATTCTCTGTTGACTTGTCTAAGTTGTATTTTGGATTTAAATTTGCTTATGGAGCTCATAGTTGCCTTTACCACGGACTTTACTTCGACAAAGTTGTTGCTATTAAGGTCATCAATCTACCAAAGCACGACGAAAATGGCGATCTTGCAGGTCGCATAACAAAGCAGTTTGGTCGGGAAGTAATCCTTTTATCTCGTCTTCACCATCCCAATGTTATTAAGTTGGTAGCAGCTTGCAGAAAGCCTGGTTATTGGATCATAACAGAGTATCTATCTCAAGGTTCGTTAAGGGCATATCTACACAAACTTGAAAACAAATCTCTACCACTTCAAAAACTGATTGCCATTGCATTGGACATTGCTCGTGGAATGGAATACATTCATTCGCAACGCATCATTCATCGAGATCTCAAACCCGAAAACGTTCTTATCGATCAAGACTTTTGTCTTAAGATTGCTGATTTTGGCATTGCTTGTGAGGAAGCACATTGTGATACACTGGCCGACGATCTCGGAACTTACCGATGGATGGCTCCCGAGATGATCAAACGTAAACATTACGGACGGAAGGTCGATCTCTACAGCTTTGGACTTATCCTGTGGGAATTGGTGGCAGGAAGAATCCCTTATGAGAATATGACTCCAATCCAAGCAGCTTATGCAGTTGTTAACAAGGTAATAGTTGTTTTGTACCATCTTGTTTCTTCACAACTGAAACACTGTTCTTGTTGTTTGTTTCAGAATATCCGACCAGTCGTCCCGAGCGAGTGTACTCCGGTGATGCGGGGATTGATCGAGCAATGTTTGTCAGTGCAACCAGCGAACCGGCCGGAGTTTTGGGAGGTGGTGAAAGTGCTAGAGCAAGTTGAGAGTTCAGTTGGGGGAGATGGGACATTGATGAATGTAGAGCAGAAGCCAAGTTGGGAAGTTCACAAGAAAGGTTTAAAGCATTGGATACAAAAGCTTGGTACTCATCATTCCCACACTTCTCTATCCTCCAAATCTAAATTCATATGA 1455 42.34 MEEDPNSWLRRTKFSHTICYRLESLRLPSFPITAPSHPKSTLNKQRSLSPPSQTTLLSTFKDARNDSKRFSTPQPCRREPREEKGKRVFNKEAKVHNSSEEEKLRSPVRHLASFKGNERSTFMKEGSWTKLFEHKRGKVTAVDAVDEFSVDLSKLYFGFKFAYGAHSCLYHGLYFDKVVAIKVINLPKHDENGDLAGRITKQFGREVILLSRLHHPNVIKLVAACRKPGYWIITEYLSQGSLRAYLHKLENKSLPLQKLIAIALDIARGMEYIHSQRIIHRDLKPENVLIDQDFCLKIADFGIACEEAHCDTLADDLGTYRWMAPEMIKRKHYGRKVDLYSFGLILWELVAGRIPYENMTPIQAAYAVVNKVIVVLYHLVSSQLKHCSCCLFQNIRPVVPSECTPVMRGLIEQCLSVQPANRPEFWEVVKVLEQVESSVGGDGTLMNVEQKPSWEVHKKGLKHWIQKLGTHHSHTSLSSKSKFI 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2315755 2317623 - CmoCh18G003540.1 Cmo18g00354 402127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00354 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Cmo18g00354 484 MobiDBLite consensus disorder prediction 62 85 - -
Cmo18g00354 484 SMART serkin_6 155 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00354 484 SUPERFAMILY Protein kinase-like (PK-like) 146 433 IPR011009 -
Cmo18g00354 484 ProSiteProfiles Protein kinase domain profile. 155 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00354 484 Gene3D Transferase(Phosphotransferase) domain 1 239 467 - -
Cmo18g00354 484 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 371 - -
Cmo18g00354 484 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 391 457 - -
Cmo18g00354 484 PANTHER TYROSINE KINASE FAMILY PROTEIN 391 457 - -
Cmo18g00354 484 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 371 - -
Cmo18g00354 484 Gene3D Phosphorylase Kinase; domain 1 144 238 - -
Cmo18g00354 484 Pfam Protein kinase domain 176 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00354 484 CDD STKc_MAP3K-like 164 432 - -
Cmo18g00354 484 MobiDBLite consensus disorder prediction 34 61 - -
Cmo18g00354 484 MobiDBLite consensus disorder prediction 30 85 - -
Cmo18g00354 484 PRINTS Tyrosine kinase catalytic domain signature 234 247 IPR001245 GO:0004672|GO:0006468
Cmo18g00354 484 PRINTS Tyrosine kinase catalytic domain signature 272 290 IPR001245 GO:0004672|GO:0006468
Cmo18g00354 484 PRINTS Tyrosine kinase catalytic domain signature 318 328 IPR001245 GO:0004672|GO:0006468
Cmo18g00354 484 PRINTS Tyrosine kinase catalytic domain signature 337 359 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00921 Cmo-Chr13:8137683 Cmo18g00354 Cmo-Chr18:2315755 5.51E-96 dispersed
Cmo18g00125 Cmo-Chr18:888021 Cmo18g00354 Cmo-Chr18:2315755 2.97E-96 dispersed
Cmo18g00354 Cmo-Chr18:2315755 Cmo05g00777 Cmo-Chr5:4440030 8.01E-84 dispersed
Cmo13g00659 Cmo-Chr13:6946045 Cmo18g00354 Cmo-Chr18:2315755 0 wgd
Cmo18g00354 Cmo-Chr18:2315755 Cmo03g01262 Cmo-Chr3:9665644 0 wgd
Cmo18g00354 Cmo-Chr18:2315755 Cmo07g00236 Cmo-Chr7:1172838 3.32E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75051 PF00069 Pkinase 8.20E-54 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00354 - - csv:101222817 660.218