Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00374 ATGCTTCTCCTTATCTTCCTCTCCGCCTTCCTCTCAAACCCTTCTCTCCTCTCCCTCTCCCTCTCCCAAGAAGGCCTCTATCTCCACACCGTTAAGCTCTCCCTCGACGACCCTGATTCCGCCCTCCGCTCATGGAACGACCGCGACGACACTCCCTGCTCCTGGTTCGGCGTCTCTTGCGACCCCACAACCAACTCCGTCCACTCCCTCGACCTCTCCAACACCAACATCGCCGGCCCATTTCCTTCCCTTCTTTGCCGTCTCCAGAATCTCTCTTCCATTTCTCTCTACAATAATTCCATCAACATGACCCTTCCCTCTACTATTTCCGAGTGTTCTAGTCTCCAGCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGAGCTACCCACTTCCATTTCTGATCTCCCCAACCTCCGGTATTTGGATTTAACTGGGAATAACTTCTCCGGCGACATTCCGCCGAGTTTTGCTCTGTTTCGAAAGTTGGAGGTTCTGTCTCTGGTTTATAATCTTCTCGATGGACCGATGCCGGCGTTTCTCGGTAACATTACAACGTTGAAGATGTTGAATCTGTCGTACAACCCATTTGCGCCGAGTCGGATCCCGCCGGAGTTTGGGAATTTGACGAATCTTGAAGTGCTTTGGCTGACTCAATGTAATTTAATTGGGGAAATTCCGCCGTCTCTTGGTCGGTTGAAACGGCTGACCGATTTGGACTTGGCGTTGAATAATCTTTATGGTCCTATTCCAAAATCGTTGACGGAGTTGAGTAGTGTGGTTCAGATTGAGCTGTATAACAACTCGTTAACAGGGGAATTGCCTTCTGGGTTTTCGAATCTGACCTCATTACGGCTGTTTGATGCATCGATGAACGGTTTAAATGGAGTGATTCCGGATGAGTTGTGTCGGTTGCCGCTTGAGAGTCTCAATCTCTATGAGAATAAGTTCGAGGGAACGTTACCGGAAAGCATTGCGAACTCGCCGGGCTTGTATGAACTCAGACTGTTCAGTAACCGGCTCACCGGCGAGTTACCGCGAAATCTTGGGAAGAACTCGCCGTTGAGATGGATTGATGTTTCCGACAACCAGTTTTCCGGTGAACTCCCAGGGGATTTGTGTGAGAAAGGCGAGTTAGAGGAGCTTCTAATGATCAACAACAACTTTTCCGGGGAGCTTCCGGCGAGTTTAGGTGGATGCGAGAGTTTAACAAGAGTCCGATTGGGTTACAATCGGTTTTCCGGCGAGGTTCCGCCGCGATTTTGGGGGCTCCCACATGTTTATCTATTCGAACTAGTGAGCAACTCGTTTTCCGGGGGAATTTCCGATGACATTGCCACTGCGAAGAACCTTTCGATTTTCATTATCTCGAAGAACAACTTCACCGGCATGATTCCGGCGGAGATTGGGGAGCTGGAGAATCTTGTGAAATTGTTAGCGACTGATAACAAACTCAATGGATCTTTACCAGAAAATCTTGCGAATCTCAGGAAGCTTTCGAGTTTGGATCTTCAAAATAATGATCTCTCTGGAGAACTTCCCAATGGAATCAAATCCTGGAGGAATCTCAACGAACTCAATTTAGCAAACAATGAATTTTCCGGCGAAATCCCTGAAGAAATCGGCGCTTTGCCGGTTCTTAATTACCTCGATCTATCTGGGAATCAATTTTCCGGCAATATCCCAAATGGGTTACAGAATTTGAATCTAAATCTCCTGAATCTCTCAAACAATCGGTTGTCCGGTGAGCTTCCGCCGTTCTTAGCCAAAGGAAACTACGGAAACAGCTTTCTGGGGAACCCAGATCTGTGTGGACATTTGGAAAGATTATGCAATAACAAAGATGAATCGAAGAGCGAAGGCTATCTCTGGTTGCTGCGTTCGATCTTCTTCCTCGCGAGTATCGTGTTCGTCGTCGGCGTCGTCTGGTTTTACCTCAGATACCGAAAGTTCAAGCTGGCTAAGAGAGAAATGGAGAAGGGGAAATGGACATTGATGTCGTTTCACAAGCTGGATTTCAGTGAATATGAGATACTGGATTGTCTTGATGAAGATAACATTATAGGTAGTGGCTCTTCTGGTAAAGTTTATAAGGTTGTGCTCAACAATGGCGAGGCGGTTGCCGTGAAGAAACTGTTCGGAGGGATGAAGAAAGAAGGCGGGGGCGGGGGTGGCGGCGGCGACGACGTCGAGAAGGGTCAAGTTCAAGACAATGGCTTCGAAGCCGAAATCGAAACGTTGGGGAAGATAAGGCATAAGAACATTGTGAAGTTATGGTGTTGTTGCATTACTAGAGATTACAAGCTTTTGATCTATGAGTATATGGTTAATGGAAGCTTGGGAGATTTGCTTCATAGTAGTAAAAAAGGATTGCTGGATTGGCCTACTAGGTTTAAGATTGCTTTGGATGCTGCTGAAGGGCTTTCTTATCTTCATCACGATTGCGTCCCTCCGATCGTACATCGAGATGTTAAGTCTAACAATATCTTGTTGGATAGTGATTTCGGAGCTAGGTTGGCGGATTTCGGTGTAGCTAAGGTCATTGATTCGACTCCGATGGGACCGAAATCCATGTCGGTTATCGCGGGGTCTTGCGGTTACATTGCACCAGAGTATGCTTACACACTCCGAGTGAACGAGAAGAGCGACATATACAGTTTCGGCGTGGTGATCCTAGAGCTGATAACGGGGAGACTCCCGATCGATCCGGAGTTCGGGGAGAAGGATTTAGTGAAATGGGTATGTTTCAAATTAGACCAAGAAGGGATTGAGCAAGTGATGGACACCAAACTAGAGAGTTGTTTCAAGGAAGAGATATGCAGAGTGCTAAACATAGGGCTGCTGTGCACCAGCCCTCTGCCCATCAACCGGCCATCGATGAGGAAAGTGGTGAAGATGCTGCAAGAAGTAGGCGCGGCGGACAACCAAATGAAAGGCAGCAGCAACAACAAGGATGGGAAATTAACGCCGTATTATTACGAAGAAGATGCTTCAGATCAGGGAAGTGTAGCAGCAGCAGCATCATAG 3027 47.54 MLLLIFLSAFLSNPSLLSLSLSQEGLYLHTVKLSLDDPDSALRSWNDRDDTPCSWFGVSCDPTTNSVHSLDLSNTNIAGPFPSLLCRLQNLSSISLYNNSINMTLPSTISECSSLQHLDLSQNLLTGELPTSISDLPNLRYLDLTGNNFSGDIPPSFALFRKLEVLSLVYNLLDGPMPAFLGNITTLKMLNLSYNPFAPSRIPPEFGNLTNLEVLWLTQCNLIGEIPPSLGRLKRLTDLDLALNNLYGPIPKSLTELSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNGLNGVIPDELCRLPLESLNLYENKFEGTLPESIANSPGLYELRLFSNRLTGELPRNLGKNSPLRWIDVSDNQFSGELPGDLCEKGELEELLMINNNFSGELPASLGGCESLTRVRLGYNRFSGEVPPRFWGLPHVYLFELVSNSFSGGISDDIATAKNLSIFIISKNNFTGMIPAEIGELENLVKLLATDNKLNGSLPENLANLRKLSSLDLQNNDLSGELPNGIKSWRNLNELNLANNEFSGEIPEEIGALPVLNYLDLSGNQFSGNIPNGLQNLNLNLLNLSNNRLSGELPPFLAKGNYGNSFLGNPDLCGHLERLCNNKDESKSEGYLWLLRSIFFLASIVFVVGVVWFYLRYRKFKLAKREMEKGKWTLMSFHKLDFSEYEILDCLDEDNIIGSGSSGKVYKVVLNNGEAVAVKKLFGGMKKEGGGGGGGGDDVEKGQVQDNGFEAEIETLGKIRHKNIVKLWCCCITRDYKLLIYEYMVNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDSDFGARLADFGVAKVIDSTPMGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPIDPEFGEKDLVKWVCFKLDQEGIEQVMDTKLESCFKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLQEVGAADNQMKGSSNNKDGKLTPYYYEEDASDQGSVAAAAS 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2433680 2437140 + CmoCh18G003740.1 Cmo18g00374 402147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00374 1008 SUPERFAMILY RNI-like 69 414 - -
Cmo18g00374 1008 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 11 980 - -
Cmo18g00374 1008 Pfam Protein kinase domain 684 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00374 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Cmo18g00374 1008 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524
Cmo18g00374 1008 Gene3D Phosphorylase Kinase; domain 1 649 774 - -
Cmo18g00374 1008 Gene3D Ribonuclease Inhibitor 258 328 IPR032675 -
Cmo18g00374 1008 Gene3D Ribonuclease Inhibitor 187 257 IPR032675 -
Cmo18g00374 1008 Gene3D Transferase(Phosphotransferase) domain 1 775 992 - -
Cmo18g00374 1008 Pfam Leucine Rich Repeat 211 232 IPR001611 GO:0005515
Cmo18g00374 1008 Pfam Leucine Rich Repeat 547 568 IPR001611 GO:0005515
Cmo18g00374 1008 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 980 - -
Cmo18g00374 1008 SMART serkin_6 682 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00374 1008 SMART LRR_sd22_2 112 138 - -
Cmo18g00374 1008 SMART LRR_sd22_2 233 259 - -
Cmo18g00374 1008 SMART LRR_sd22_2 472 495 - -
Cmo18g00374 1008 SMART LRR_sd22_2 496 525 - -
Cmo18g00374 1008 SMART LRR_sd22_2 88 111 - -
Cmo18g00374 1008 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Cmo18g00374 1008 Gene3D Ribonuclease Inhibitor 21 181 IPR032675 -
Cmo18g00374 1008 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515
Cmo18g00374 1008 SUPERFAMILY RNI-like 355 585 - -
Cmo18g00374 1008 SUPERFAMILY Protein kinase-like (PK-like) 674 967 IPR011009 -
Cmo18g00374 1008 SMART LRR_typ_2 136 159 IPR003591 -
Cmo18g00374 1008 SMART LRR_typ_2 281 305 IPR003591 -
Cmo18g00374 1008 SMART LRR_typ_2 496 519 IPR003591 -
Cmo18g00374 1008 SMART LRR_typ_2 88 112 IPR003591 -
Cmo18g00374 1008 SMART LRR_typ_2 544 567 IPR003591 -
Cmo18g00374 1008 SMART LRR_typ_2 184 208 IPR003591 -
Cmo18g00374 1008 SMART LRR_typ_2 209 233 IPR003591 -
Cmo18g00374 1008 ProSiteProfiles Leucine-rich repeat profile. 138 160 IPR001611 GO:0005515
Cmo18g00374 1008 ProSiteProfiles Protein kinase domain profile. 682 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00374 1008 Gene3D Ribonuclease Inhibitor 329 615 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01288 Cmo18g00374 CCT
Cmo13g00644 Cmo18g00374 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00911 Cmo-Chr4:4582254 Cmo18g00374 Cmo-Chr18:2433680 0 dispersed
Cmo11g01873 Cmo-Chr11:13048466 Cmo18g00374 Cmo-Chr18:2433680 0 dispersed
Cmo18g00374 Cmo-Chr18:2433680 Cmo19g00527 Cmo-Chr19:6163173 0 dispersed
Cmo13g00644 Cmo-Chr13:6856844 Cmo18g00374 Cmo-Chr18:2433680 0 wgd
Cmo18g00374 Cmo-Chr18:2433680 Cmo03g01288 Cmo-Chr3:9748626 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75052 PF00069 Pkinase 4.80E-41 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00374 - - cmos:111457094 1904.41