Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00377 ATGCCTGTCTCTTCTTTATCTTCTTCTTCTTCCCCTCTCTCTCCCCTCTGTTTTCTCACTCTGCTTCTCATTTTCATCACACCATCAGAGTGTGCTGCAACACCAGCACCTAAAAAGGCCCCCGCCCGCCGCCACCGCCTCCTCTCTGTCGACTACTACACCAAAACATGCCCTCACCTCGAGCAACTCGTCTCCTCAATCACCACTCAACAGTTCAGAGACGCACCAGTCTCAGCTCCAGCAACACTCCGCCTGTTCTTTCATGATTGCTTTGTAGAAGGCTGTGATGGGTCGATTCTGATATCGACGAAGCCTGGCAGCAAAGTGGCAGCGGAGAAGGATGCAGCGGACAACAAGGGGCTGAGACCGGAGGGGTTTGAAAGCATCAAGAAGGCCAAGGCGTTGGTTGAGAGCAAGTGCCCTGGCGTTGTGTCTTGTGCTGACATCCTCGCAATTGCAGCCAGAGATTTTGTCCATTTGGCAGGAGGACCGTATTACCAGGTGAAGAAGGGACGATGGGACGGGAAGATATCAATGGCGGCCAGAGTAGGTTCCAATCTGCCGCAAGCAAACTCCACCGTTGATCAGCTTCTCAAACTCTTCAATTCCAAAGGTCTATCAAGCGATGACCTCGTTGTGCTCTCCGGTGCGCACACGATCGGATTTGCGCACTGCGAGCATTTCACAAACCGTCTCTACGACTACAGAGGCACGAAAAAACCGGATCCGGCGATCGACGGGAGACTACTCAAGGAGCTTAAAATGTCGTGCCCTAGGTACGGTGGAAATACGGATATAGTGGCGCCGTTCGATGTAACGACACCGTTTGTGTTCGACCACGCGTACTACGGGAATTTGGAAAGTAAACTAGGGCTGTTGGCTACGGATCAAGCTCTGGTATCGGATGCGAGGATGAAGACGATGGTGCAGAGCTTGGCGAAAGATAAGCAGAAGTTTTTTCAAGCTTTCGCGGCGGCGATGGACAAAATGGGGTCGATCGGAGTGAAGAGGGGGCGACGACATGGAGAGCGACGGACGGATTCCGGCGTAGTCGCCAAGCGAACTACACAGTTCAGCAGCACCAGAACGCAGCCGCTCAGATCCATGAGAGCTGTGGTTCAGAGAGTCGCCTCTGCAAGCGTCGAGGTCGATGGGCGCACCGTTTCGGAGATCGGGCCGGGCCTTCTCGTGCTCGTCGGCGTTCATGACTCCGACACCGATTCCGACGCCGAATACATATGCCGTAAGGTCCTGAATATGAGATTGTTCCCAAATGAGAGTACCTCCAAGGCTTGGGACTTGAATGTAATGCAGAAGAACTACGAGGTTCTACTAGTTAGTCAGTTTACACTCTATGGAATATTGAAGGGCAATAAGCCGGACTTTCATGTGGCAATGCCTCCACAAACTGCTAAGCCCTTCTATGCTTCTGTAGTTGAGAGGTTTGGAAAATCCTACAAACCAGATGCCATTAAAGATGGAGTGTTTGGAGCAAAGATGAAGGTCAATTTGGTGAATGATGGGCCTGTCACAATGCAGATTGACTCCAAACCCTCCAAGTAA 1563 51.82 MPVSSLSSSSSPLSPLCFLTLLLIFITPSECAATPAPKKAPARRHRLLSVDYYTKTCPHLEQLVSSITTQQFRDAPVSAPATLRLFFHDCFVEGCDGSILISTKPGSKVAAEKDAADNKGLRPEGFESIKKAKALVESKCPGVVSCADILAIAARDFVHLAGGPYYQVKKGRWDGKISMAARVGSNLPQANSTVDQLLKLFNSKGLSSDDLVVLSGAHTIGFAHCEHFTNRLYDYRGTKKPDPAIDGRLLKELKMSCPRYGGNTDIVAPFDVTTPFVFDHAYYGNLESKLGLLATDQALVSDARMKTMVQSLAKDKQKFFQAFAAAMDKMGSIGVKRGRRHGERRTDSGVVAKRTTQFSSTRTQPLRSMRAVVQRVASASVEVDGRTVSEIGPGLLVLVGVHDSDTDSDAEYICRKVLNMRLFPNESTSKAWDLNVMQKNYEVLLVSQFTLYGILKGNKPDFHVAMPPQTAKPFYASVVERFGKSYKPDAIKDGVFGAKMKVNLVNDGPVTMQIDSKPSK 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2451576 2456264 - CmoCh18G003770.1 Cmo18g00377 402150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00377 520 MobiDBLite consensus disorder prediction 338 357 - -
Cmo18g00377 520 CDD Dtyr_deacylase 369 516 IPR003732 GO:0002161|GO:0005737|GO:0051499
Cmo18g00377 520 PANTHER PEROXIDASE 19 37 340 - -
Cmo18g00377 520 ProSitePatterns Peroxidases active site signature. 79 90 IPR019794 GO:0004601
Cmo18g00377 520 Pfam Peroxidase 69 315 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 TIGRFAM TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 369 516 IPR003732 GO:0002161|GO:0005737|GO:0051499
Cmo18g00377 520 Gene3D - 369 519 IPR023509 -
Cmo18g00377 520 CDD secretory_peroxidase 48 351 IPR033905 GO:0004601|GO:0042744
Cmo18g00377 520 ProSitePatterns Peroxidases proximal heme-ligand signature. 210 220 IPR019793 -
Cmo18g00377 520 Gene3D Peroxidase, domain 2 188 330 - -
Cmo18g00377 520 SUPERFAMILY Heme-dependent peroxidases 48 347 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 PANTHER PEROXIDASE 25-RELATED 37 340 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 PRINTS Plant peroxidase signature 143 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 PRINTS Plant peroxidase signature 162 177 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 PRINTS Plant peroxidase signature 285 302 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 PRINTS Plant peroxidase signature 57 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 PRINTS Plant peroxidase signature 81 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 PRINTS Plant peroxidase signature 325 338 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 PRINTS Plant peroxidase signature 124 137 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 PRINTS Plant peroxidase signature 269 284 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 PRINTS Plant peroxidase signature 209 221 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 Gene3D - 51 347 - -
Cmo18g00377 520 Hamap D-aminoacyl-tRNA deacylase [dtd]. 369 516 IPR003732 GO:0002161|GO:0005737|GO:0051499
Cmo18g00377 520 Pfam D-Tyr-tRNA(Tyr) deacylase 370 515 IPR003732 GO:0002161|GO:0005737|GO:0051499
Cmo18g00377 520 PRINTS Haem peroxidase superfamily signature 162 174 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 PRINTS Haem peroxidase superfamily signature 271 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 PRINTS Haem peroxidase superfamily signature 79 93 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 PRINTS Haem peroxidase superfamily signature 144 161 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 PRINTS Haem peroxidase superfamily signature 210 225 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 ProSiteProfiles Plant heme peroxidase family profile. 47 352 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00377 520 SUPERFAMILY DTD-like 368 516 IPR023509 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00377 Cmo-Chr18:2451576 Cmo15g00076 Cmo-Chr15:397875 6.80E-92 dispersed
Cmo13g00641 Cmo-Chr13:6843048 Cmo18g00377 Cmo-Chr18:2451576 7.95E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00377 K00430 - csv:101216263 612.838