Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00391 ATGATGGCGGAGAGAAACAAGTATGAAGACGACGAGGGTGGAATCAAGCTATTTGGGACAACAATTACGTTGCAAAACAAGAGGCAAATGAAAGAAGAAGACACCAACAAATCAGAATCAGCTGAAAAAAAACCGGACAAGATGATTCCTTGCCCAAGATGCAAAAGCCCCGACACCAAATTTTGTTATTTCAATAACTACAACGTTAATCAGCCAAGACATTTCTGTAAGGGCTGCCAGAGATACTGGACGGCCGGTGGCGCCCTCCGCAACGTCCCCGTCGGAGCCGGCCGCCGGAAAACCAAGCCTCCTTGTCGGACCTTTGATGGGTTGCCGGAGAATTGTGTCTTTGATTCTTCAGGGATGGTGGCGGTGCAGCCGTTTGAGTTGGAGGAGTGGCACGGTGGTTTCAACCAAATTTCACCGGTGAAGCGGCGGAGAGATTGCCAAGATGGTCAAACTTGTTGA 468 49.36 MMAERNKYEDDEGGIKLFGTTITLQNKRQMKEEDTNKSESAEKKPDKMIPCPRCKSPDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFDGLPENCVFDSSGMVAVQPFELEEWHGGFNQISPVKRRRDCQDGQTC 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2529359 2529826 - CmoCh18G003910.1 Cmo18g00391 402164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00391 155 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Cmo18g00391 155 Pfam Dof domain, zinc finger 46 102 IPR003851 GO:0003677|GO:0006355
Cmo18g00391 155 MobiDBLite consensus disorder prediction 27 47 - -
Cmo18g00391 155 Coils Coil 24 44 - -
Cmo18g00391 155 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 11 148 - -
Cmo18g00391 155 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Cmo18g00391 155 PANTHER CYCLIC DOF FACTOR 2 11 148 IPR045174 GO:0003700|GO:0006355
Cmo18g00391 155 MobiDBLite consensus disorder prediction 19 47 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00184 Cmo18g00391 CCT
Cmo03g01322 Cmo18g00391 CCT
Cmo13g00632 Cmo18g00391 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00391 Cmo-Chr18:2529359 Cmo01g00829 Cmo-Chr1:4438108 2.52E-35 dispersed
Cmo13g00632 Cmo-Chr13:6799304 Cmo18g00391 Cmo-Chr18:2529359 4.41E-85 wgd
Cmo18g00391 Cmo-Chr18:2529359 Cmo03g01322 Cmo-Chr3:9881323 6.59E-50 wgd
Cmo18g00391 Cmo-Chr18:2529359 Cmo07g00184 Cmo-Chr7:956095 5.63E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11495 PF02701 zf-Dof 1.90E-31 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00391 - - cmax:111490555 336.65