Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00399 ATGGAGAAAAAGGGTACCATTTTAATGCAAAGATATGAGCTTGGGAGGCTTCTTGGACAGGGAACTTTCGCGAAAGTCTACCATGCTCGTAATCTCAAGTCAGGCCAGAGCGTGGCGATTAAGATTATTGATAAAGAGAAAGTACTGCGTGGTGGGTTGATCGATCAAATCAAGAGGGAAATCTCTGTGATGCGCCTTGTCCGCCATCCTAATGTGGTGCAGCTCTATGAGGTGATGGCTAGCAAGACCAAGATCTATTTTGCCATGGAGTTTGTCAAAGGTGGGGAGCTTTTTAACAAAGTGGCTCGAGGGAAGCTCAAGGAAGATGCTGCTCGTAAGTACTTTCAGCAGCTCATTGGTGCTGTTGATTATTGTCATAGCCGTGGTGTGTATCATAGAGATATCAAGCCTGAGAATCTCCTTCTTGATGAGTTTGGGAATCTTAAGATTTCGGATTTTGGGTTGAGTGCTTTGGCTGAGTCTAGACGCCAAGATGGGCTTCTTCATACCACTTGTGGTACCCCTGCTTATGTCGCCCCTGAAGTCATCAACAAAAAAGGTTATGATGGAGCTAAAGCTGATATTTGGTCATCTGGGGTTGTCCTGTTTGTTCTTCTAGCTGGTTATCTCCCTTTCAACGAACAAAATCTAATGGAAATGTACAAAAAAATCACCAGAGGAGAATTCAAATGCCCTCAATGGTTTCCCCCAGAAGCTCGCAAGCTCCTCTCAAGAATCCTCAATCCATGTCCTTTCACAAGAATAAACATGGCCACACTCATGGAAAATTCCTGGTTCAAAAAGGGTTTCAAGGCAAATGTAGCGGCTCCAAAACCCCTTCAAATCAAAGGCGACGTCTCGTCTATAAGCGATGTCGAGGTCGCTTTAGACGAGGGAAGCTCTGTTAGTAACAGCAGCATTGAGAGTGGAAGGCCACCAACAAGAACTAATTCCTTCAATGCATTTGATATCATATCCCTCTCACAAGGTTTTGATCTGTCAGGTTTGTTTGAGAATGATATGAATGAGAGGCCACCGACACGGTTCACTACGACGAAACCAGCATCGACGATCGTGTCGAAGTTTGAAGAGATAGCAGAGATGGAGAGGTTCAAAGTGATGAAGAAAGATGGGATGGTGAAACTCCAGGGAAGTAAACAAGGAAGAAAAGGGCAGTTGGGTATTGATGCTGAGATATTTGAAGTGACACCTTCTTTTTTTGTGGTGGAGGTCAAGAAAACTGCAGGAGACACCTTGGAATACAAGCAATTTTATAACAAAGACATGAAGCCTTGCCTTAAGGACATCGTGTGGGCTTGGGAAGGAAACGAGCAGCAACAACAGCAACAACAACAACAGCAGCCGCAGCCGCCGCAGCCGCAGCTCCAAATCCATAATAGATGA 1404 44.87 MEKKGTILMQRYELGRLLGQGTFAKVYHARNLKSGQSVAIKIIDKEKVLRGGLIDQIKREISVMRLVRHPNVVQLYEVMASKTKIYFAMEFVKGGELFNKVARGKLKEDAARKYFQQLIGAVDYCHSRGVYHRDIKPENLLLDEFGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGYLPFNEQNLMEMYKKITRGEFKCPQWFPPEARKLLSRILNPCPFTRINMATLMENSWFKKGFKANVAAPKPLQIKGDVSSISDVEVALDEGSSVSNSSIESGRPPTRTNSFNAFDIISLSQGFDLSGLFENDMNERPPTRFTTTKPASTIVSKFEEIAEMERFKVMKKDGMVKLQGSKQGRKGQLGIDAEIFEVTPSFFVVEVKKTAGDTLEYKQFYNKDMKPCLKDIVWAWEGNEQQQQQQQQQQPQPPQPQLQIHNR 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2594858 2597680 + CmoCh18G003990.1 Cmo18g00399 402172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00399 467 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00399 467 ProSiteProfiles NAF domain profile. 314 338 IPR018451 GO:0007165
Cmo18g00399 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cmo18g00399 467 MobiDBLite consensus disorder prediction 443 467 - -
Cmo18g00399 467 Gene3D Transferase(Phosphotransferase) domain 1 3 318 - -
Cmo18g00399 467 CDD CIPK_C 320 434 - -
Cmo18g00399 467 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00399 467 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00399 467 PANTHER - 2 450 - -
Cmo18g00399 467 Gene3D Kinase associated domain 1, KA1 319 439 - -
Cmo18g00399 467 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 20 2 450 - -
Cmo18g00399 467 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cmo18g00399 467 SUPERFAMILY Protein kinase-like (PK-like) 8 318 IPR011009 -
Cmo18g00399 467 CDD STKc_SnRK3 11 265 - -
Cmo18g00399 467 Pfam NAF domain 317 375 IPR004041 GO:0007165
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00625 Cmo18g00399 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00625 Cmo-Chr13:6757756 Cmo18g00399 Cmo-Chr18:2594858 0 wgd
Cmo18g00399 Cmo-Chr18:2594858 Cmo03g01327 Cmo-Chr3:9900418 0 wgd
Cmo18g00399 Cmo-Chr18:2594858 Cmo07g00176 Cmo-Chr7:930218 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75054 PF00069 Pkinase 1.40E-72 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00399 K07198 - csv:101206082 771.541