Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00405 ATGCCTGAAACCAACTTCCCAACCTCTCATCTTTTCAACCACTACCCTCCAATGCTTTCACCGCCCTCTCCCAAACATCGGTTCCGTTCATCTGGAATCAAGGCAATCCAAGGGACTGACTGGCTTGTGAGTATCAGAATGATGGTTTCTGATATCCCGATTTGCCACACTTGTGGTGAGCAAGTCGGAGTTGATACCAATGGAGAGGTTTTCGTTGCTTGCCATGAGTGCCAATTTCCCATTTGCAAAGTCTGCGTTCAGTATGATATCAAGGAAGGCCGCAATGTTTGCTTGCGGTGTGGCTCGCCATTTGACAAGAATTTACTGATGGATGATACAAAGACATCAGGAAATCAACACACCATGGCATCTCATCTCAGTCATTCTCAGGATGTTGGAGTTCATGCTAGACATGTCAGTAGCGTATCAACTGTGGATAGTGAATTGAATGATGAATCTGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAACAAAAAGAAAAGGTCTACTGTGAAGACAGAACAAGAAGCTCAAGTTCCACCCCAACAACAAATGGAAGAGAAGCAGATTTCAGAGGAGGCTGTAGTTACACACTCATTTTCGTCAGTTTATCCGATTCCGTCGAGCAGATTAACACCATACAGAATAGTGATAATCATGCGATTGATCATTCTAGGTCTTTTCTTTCAATATAGGATTACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGTGAAATCTGGTTCGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTTTCCTGTCTGCAGGGACACATTTATTGACAGATTATCAGCCAGGTTTGAAAGAGAGGGAGAACCTTCCCAGCTTGCTGCTGTGGATTTTTTTGTGAGTACCGTTGATCCTTTGAAAGAACCTCCTCTAATCACTGCGAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAAGTCTCCTGCTATGTGTCCGATGACGGTGCAGCTATGCTCACATTTGAATCTCTAGTTGAAACAGCTGACTTTGCAAGGAAATGGGTTCCATTCTGCAAAAAATTCTCCATTGAACCTCGAGCTCCTGAGTTTTACTTCTCCCAGAAAATAGACTATTTGAAAGATAAAGTACAACCTTCTTTTGTAAAGGAACGTAGAGCTATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTGGCAAAGGCTCAAAAAACACCTGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAACAATCCACGTGATCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACCGGCGCCCATGACGTAGAGGGAAATGAACTTCCTCGACTAGTCTACGTCTCCAGAGAGAAGAGGCCTGGTTACCAGCATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTAAGGGTATCTGCAGTCCTCACAAATGCCCCCTTCATTCTTAACCTTGACTGTGATCACTATGTTAACAATAGTCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTTGGCCGAGATGTATGCTATGTTCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCCAATCGCAACACGGTTTTCTTCGATGTGAACATGAAAGGATTGGATGGCATCCAGGGACCAGTTTATGTTGGTACAGGTTGTGTTTTCAATAGACAGGCACTCTATGGCTACGGACCTCCTTCCATGCCTAGCTTATCTAAGACATCCTCGTCATCTTGCTCTTGGTGTGGCTGCTGCTCTTGCTGCTGCCCTTCCAAGAAGATCTCAAAAGATCAGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCAGGGAAATAGATAATTATGATGAGTATGAGAGATCAATGCTGATTTCTCAACTGAGCTTTGAGAAAACTTTCGGATTGTCGTCTGTGTTTATCGAGTCTACGCTAATGGAAAATGGAGGAGTAGCAGAATCTGCAAATCCGTCGACTTTGATCAAGGAAGCAATTCATGTCATTAGCTGTGGTTATGAAGAGAAGTCCGCTTGGGGAAAAGAGATTGGTTGGATATATGGGTCAGTGACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGGTGGAGGTCCATCTACTGCATGCCATTTAGGCCAGCATTCAAAGGGTCCGCACCAATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTCTCAGCAGACACTGTCCATTATGGTATGGATTTGCAGGCGGCCGCCTCAAATGGCTCCAAAGAATGGCTTACATAAACACCATTGTCTATCCCTTCACCTCGCTCCCTCTTGTTGCTTACTGCTCATTGCCTGCAATCTGCCTGCTCACAGGAAAGTTCATCATTCCAACGCTCTCGAACCTAGCAAGTACCCTTTTTCTCGGTCTCTTCTTGTCCATCATTCTCACGAGTGTCCTCGAGCTGCGTTGGAGTGGTGTTAGCATCGAAGATATATGGCGTAACGAGCAATTCTGGGTCATAGGAGGCGTCTCGGCACATCTCTTTGCTGTCTTCCAAGGTTTCCTAAAGATGTTAGCTGGTGTCGACACCAACTTCACGGTTACAGCAAAGGCAGCTGAGGACACCGAGTTTGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCGACAACCCTTATCGTCATCAACCTAGTCGGTGTCGTTGCGGGATTTTCTGATGCATTAAATGGTGGATATGAAGCATGGGGTCCTCTTTTTGGCAAGGTATTCTTTGCGTTTTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAGAATAGGACTCCAACCATTGTTGTTCTTTGGTCAGTGCTGTTGGCCTCAGTTTTCTCACTTGTTTGGGTGAAGATTAACCCATTTGTGAACCAGGTTGACAGTACAACCGTTGCACAAAGCTGCATTGCTATAGATTGTTGA 3087 44.57 MPETNFPTSHLFNHYPPMLSPPSPKHRFRSSGIKAIQGTDWLVSIRMMVSDIPICHTCGEQVGVDTNGEVFVACHECQFPICKVCVQYDIKEGRNVCLRCGSPFDKNLLMDDTKTSGNQHTMASHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRSTVKTEQEAQVPPQQQMEEKQISEEAVVTHSFSSVYPIPSSRLTPYRIVIIMRLIILGLFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWFPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDVEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSMPSLSKTSSSSCSWCGCCSCCCPSKKISKDQTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVISCGYEEKSAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPFRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAAEDTEFGELYMVKWTTLLIPPTTLIVINLVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTTVAQSCIAIDC 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2623298 2630922 - CmoCh18G004050.1 Cmo18g00405 402178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00405 1028 SUPERFAMILY Nucleotide-diphospho-sugar transferases 314 821 IPR029044 -
Cmo18g00405 1028 Pfam Zinc-binding RING-finger 53 106 IPR027934 -
Cmo18g00405 1028 Pfam Cellulose synthase 300 1018 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo18g00405 1028 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 449 594 IPR029044 -
Cmo18g00405 1028 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 48 1028 - -
Cmo18g00405 1028 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 48 1028 - -
Cmo18g00405 1028 SUPERFAMILY RING/U-box 47 113 - -
Cmo18g00405 1028 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 126 IPR013083 -
Cmo18g00405 1028 MobiDBLite consensus disorder prediction 161 192 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00617 Cmo18g00405 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00405 Cmo-Chr18:2623298 Cmo11g00448 Cmo-Chr11:2188522 0 dispersed
Cmo13g00617 Cmo-Chr13:6712859 Cmo18g00405 Cmo-Chr18:2623298 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00405 K10999 - csv:101208988 1895.17