Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00408 ATGGATGCCACCTTCAACAACAACCGCCACCAATTCTATTCCGGTGATCCCTTAGATGATAGCGACGAGAAAGGCCCTGATTCTCCGCCTTCTACTTCCGCCGCCGCCGCCGCCGCCAAGAAGGGCAGAAGAGGGATGAAGAAGAAAGTGGTGTCGGTGAGAATTAATGGTGATACCCCAAGGAATTCTTCTGGTTCTACTACTCCTCCTCCTGATTCTTGGGCTTGGAGAAAGTATGGTCAAAAACCCATCAAAGGCTCCCCTTATCCAAGGGCGTATTATAGGTGTAGTAGTTCAAAGGGATGTCCGGCGAGGAAACAAGTAGAGAGGAATCGGCTTGATCCAACCATGTTGGTGATTTCATATTCGTGTGAACATAATCACTCCGGTCCAGTTTCTAGAAACATCAATAATCACCACCAAGCCGCCGCCGTGGAGAAACCCGGTTCGCCGGAGAGTGTACCGGTTCACCCAGAACCGGAACCGGAAGTGGAAGAGAAGTTCGTGGATATGGGAGAGGAGTCGTTGATAACGGGGGACGAGTTCAGTTGGTTCGGGGAAATGGAAACGACGTCGTCCACTGTTCTCGAGAACTCCATTTTTTCTGGATGCTCGAGTGGATTGGGAGATTCGATTTCAAGTGACGTGGCAATGCTTTTTCCGATGGGAGATAATGACGTGGACGACTCACTGTTTGCGGATCTCGGGGAGTTGCCGGAGTGTTCGTTGGTGTTCCGGCACGGCGGAGCCCGGGGATTGGCGGCGGATGAACAACCGGCTGCCGGGCAGCGGCGGATCACTCCCTGGTGCGGAACCACCACATGA 825 52.97 MDATFNNNRHQFYSGDPLDDSDEKGPDSPPSTSAAAAAAKKGRRGMKKKVVSVRINGDTPRNSSGSTTPPPDSWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLVISYSCEHNHSGPVSRNINNHHQAAAVEKPGSPESVPVHPEPEPEVEEKFVDMGEESLITGDEFSWFGEMETTSSTVLENSIFSGCSSGLGDSISSDVAMLFPMGDNDVDDSLFADLGELPECSLVFRHGGARGLAADEQPAAGQRRITPWCGTTT 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2667866 2669531 + CmoCh18G004080.1 Cmo18g00408 402181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00408 274 MobiDBLite consensus disorder prediction 56 71 - -
Cmo18g00408 274 MobiDBLite consensus disorder prediction 1 79 - -
Cmo18g00408 274 Gene3D WRKY domain 58 132 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo18g00408 274 SUPERFAMILY WRKY DNA-binding domain 67 130 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo18g00408 274 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 20 272 IPR044810 GO:0003700
Cmo18g00408 274 ProSiteProfiles WRKY domain profile. 72 131 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo18g00408 274 SMART WRKY_cls 70 130 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo18g00408 274 PANTHER OS01G0750100 PROTEIN 20 272 - -
Cmo18g00408 274 Pfam WRKY DNA -binding domain 72 128 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00614 Cmo18g00408 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00408 Cmo-Chr18:2667866 Cmo18g00508 Cmo-Chr18:3605353 5.72E-34 dispersed
Cmo11g01984 Cmo-Chr11:13623437 Cmo18g00408 Cmo-Chr18:2667866 1.06E-50 wgd
Cmo13g00614 Cmo-Chr13:6701906 Cmo18g00408 Cmo-Chr18:2667866 2.08E-130 wgd
Cmo18g00408 Cmo-Chr18:2667866 Cmo19g01045 Cmo-Chr19:9102316 1.87E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11497 PF03106 WRKY 3.20E-24 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00408 - - csv:101203902 411.379