Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00408 | ATGGATGCCACCTTCAACAACAACCGCCACCAATTCTATTCCGGTGATCCCTTAGATGATAGCGACGAGAAAGGCCCTGATTCTCCGCCTTCTACTTCCGCCGCCGCCGCCGCCGCCAAGAAGGGCAGAAGAGGGATGAAGAAGAAAGTGGTGTCGGTGAGAATTAATGGTGATACCCCAAGGAATTCTTCTGGTTCTACTACTCCTCCTCCTGATTCTTGGGCTTGGAGAAAGTATGGTCAAAAACCCATCAAAGGCTCCCCTTATCCAAGGGCGTATTATAGGTGTAGTAGTTCAAAGGGATGTCCGGCGAGGAAACAAGTAGAGAGGAATCGGCTTGATCCAACCATGTTGGTGATTTCATATTCGTGTGAACATAATCACTCCGGTCCAGTTTCTAGAAACATCAATAATCACCACCAAGCCGCCGCCGTGGAGAAACCCGGTTCGCCGGAGAGTGTACCGGTTCACCCAGAACCGGAACCGGAAGTGGAAGAGAAGTTCGTGGATATGGGAGAGGAGTCGTTGATAACGGGGGACGAGTTCAGTTGGTTCGGGGAAATGGAAACGACGTCGTCCACTGTTCTCGAGAACTCCATTTTTTCTGGATGCTCGAGTGGATTGGGAGATTCGATTTCAAGTGACGTGGCAATGCTTTTTCCGATGGGAGATAATGACGTGGACGACTCACTGTTTGCGGATCTCGGGGAGTTGCCGGAGTGTTCGTTGGTGTTCCGGCACGGCGGAGCCCGGGGATTGGCGGCGGATGAACAACCGGCTGCCGGGCAGCGGCGGATCACTCCCTGGTGCGGAACCACCACATGA | 825 | 52.97 | MDATFNNNRHQFYSGDPLDDSDEKGPDSPPSTSAAAAAAKKGRRGMKKKVVSVRINGDTPRNSSGSTTPPPDSWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLVISYSCEHNHSGPVSRNINNHHQAAAVEKPGSPESVPVHPEPEPEVEEKFVDMGEESLITGDEFSWFGEMETTSSTVLENSIFSGCSSGLGDSISSDVAMLFPMGDNDVDDSLFADLGELPECSLVFRHGGARGLAADEQPAAGQRRITPWCGTTT | 274 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 2667866 | 2669531 | + | CmoCh18G004080.1 | Cmo18g00408 | 402181 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00408 | 274 | MobiDBLite | consensus disorder prediction | 56 | 71 | - | - | |
Cmo18g00408 | 274 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
Cmo18g00408 | 274 | Gene3D | WRKY domain | 58 | 132 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo18g00408 | 274 | SUPERFAMILY | WRKY DNA-binding domain | 67 | 130 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo18g00408 | 274 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 20 | 272 | IPR044810 | GO:0003700 | |
Cmo18g00408 | 274 | ProSiteProfiles | WRKY domain profile. | 72 | 131 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo18g00408 | 274 | SMART | WRKY_cls | 70 | 130 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo18g00408 | 274 | PANTHER | OS01G0750100 PROTEIN | 20 | 272 | - | - | |
Cmo18g00408 | 274 | Pfam | WRKY DNA -binding domain | 72 | 128 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo13g00614 | Cmo18g00408 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo18g00408 | Cmo-Chr18:2667866 | Cmo18g00508 | Cmo-Chr18:3605353 | 5.72E-34 | dispersed | |
Cmo11g01984 | Cmo-Chr11:13623437 | Cmo18g00408 | Cmo-Chr18:2667866 | 1.06E-50 | wgd | |
Cmo13g00614 | Cmo-Chr13:6701906 | Cmo18g00408 | Cmo-Chr18:2667866 | 2.08E-130 | wgd | |
Cmo18g00408 | Cmo-Chr18:2667866 | Cmo19g01045 | Cmo-Chr19:9102316 | 1.87E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11497 | PF03106 | WRKY | 3.20E-24 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00408 | - | - | csv:101203902 | 411.379 |