Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00411 ATGGCTGCTGCTGCGATTTTCTCGTCTTTACGAAGAAGGAGATCGCCATCGTTGGAGGCGTTTTTGGCTCCCGTTGATCTCTCCAATGTCGCCTTAGTTCAAACTCTAGGGATCGTTGCGACGGAGCTCGTTTCGCGATTTTCAGAGAAGTCTTTCTTCTTTCAGCGAAGAAATTCCCGATCTCTGATTAGGAAACTTGAGGTTTGTCTCGTATTTTTGGATTGCTTGAAGGATATTGATGCGACTTTGCCTCACACTGCGTTGCTCTGTTTGAAAGAGCTTTATTTATTGTTGTATCGATCTAAAATACTTCTTGATTATTGCTCTGAATCAAGTAAGTTATGGCTGTTGCTTCAGAACCAGACGATTTCAGGGCATTTCAATGATTTGAATTTGGAGTTATTGACATTTTTAGATGTTTTTCCTCTTGAGGAAGTGGAATTAGGAGTGGATGTTAGAGAACAGGTTGAGCTTTTGCAGAAGCAATTGAGAAGGACGAGGATGTTCGTCGATGAACACGTCGAGACGTTGAGGACTCGCTTCCTTTCGTTTCTTGACGAGTTTGAGAACGGTCGGCTTCCAAATCAGAGGGAATTGAGGGAGTTTTTCGTGGATAAGTTGGGGATTCGGAATGCGAAGAGTTGTAGAACTGAAATTGAGTTTCTGGAGGAGCAGATTGTCAATCATGATGGCGACGTCGAGCCCACCGTAGCGGTGTTGAACGGTTTCGTTGCTTTTACGAGATATAGCAGGTTTTTCCTCTTTGGATTCGAGGAAGATGATATTGATTCAGGAGCAGCAAACCAGAAGAAGCTGAAGAAGAATTTGATTATGCAGGAGATTGCTGATACGTTCTTAACAATTCCAAGGGATTTTTGCTGCCCAATATCTCTGGATTTGATGAAAGATCCAGTGATCATTTCTACAGGTCAAACATATGATCGTAGTTCGATCACGAGATGGTTGGAAGAAGGGCACAACACTTGCCCGAAATCAGGGCAAATGCTCGTCCATACCCGTCTCGCTCCGAACCGTGCGTTAGGGAATTTGATCATGCAATGGTGTATAGCACATGGAGTTCCTTATGATCCACCAGAGGGGATGGATGCATCTGTAGAAAGTTATGCAATGGCTTCACCTACACGAGCTGCTCTCGAAGCCAACCGAGCAACAGCTATGATTCTTATTCAACAGTTATCAATTGGGTCACAGGATGCGAAGACGATTGCTGCTCGGGAGATTCGTTTGTTGGCGAAAACGGGGAAAGAAAACCGCGCTTTCATTGCCGAAGCTGGTGCCATCCCTCATCTTCAAAAGTTGCTGACTTCCCCAAACCCAGTAGCACAGGAGAATTCTGTAACAGCTATGCTTAACCTTTCAATATATGACAAGAACAAAAGTTTGATTATGAGCGAGGTAGGGTGCTTAGGATCGATAACCGAAGTGTTGAGATCTGGACATAGTACCGAAGCACGGGAAAACGCTGCGGCTACGTTATTCAGCCTCTCTGCAGTTCATGACTACAAGAAGAGAATAGCAGAGGAGGGTGGTGCAGTTGAAGCCTTAGCAGGGTTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAACCTCTCGACTCACACGGAGAATTGCGTTCGGATGATCGACGCTGGGGCAGTAACAGCTCTCGTAGAAGCACTGGGGAATGAAGGTGTTGCTGAAGAAGCAGCAGGTGCATTGGCCTTGGTTGTTCGACAGCCGATAGGGGCTGAAGCAGTCGGTAAAGACGAGAGAGCTGTAGCAGGATTGATGGCAATGATGCGATGTGGAACACCAAGAGGAAAAGAGAACGCAGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGCGGAGCTGCCACGACCGAGCAGGTGTTCAAGGCTCCTGCATTGGCTGGGTTGCTCCAAATGCTCCTATTTACCGGTACCAAGCGAGCAAGAAGAAAGGCTGCTTCGCTAGCTAGAGTGTTCCAAAGATGCGAGCAAGTCACAATGCATTATGCCTATGCAAGTAACTCGACCCCTAACAGGGATTCGAGCTTCCCTAGCGAGGTGTCTGTACCGATATCCATATCGGTACCCGTCGTATAG 2127 46.54 MAAAAIFSSLRRRRSPSLEAFLAPVDLSNVALVQTLGIVATELVSRFSEKSFFFQRRNSRSLIRKLEVCLVFLDCLKDIDATLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNQTISGHFNDLNLELLTFLDVFPLEEVELGVDVREQVELLQKQLRRTRMFVDEHVETLRTRFLSFLDEFENGRLPNQRELREFFVDKLGIRNAKSCRTEIEFLEEQIVNHDGDVEPTVAVLNGFVAFTRYSRFFLFGFEEDDIDSGAANQKKLKKNLIMQEIADTFLTIPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWLEEGHNTCPKSGQMLVHTRLAPNRALGNLIMQWCIAHGVPYDPPEGMDASVESYAMASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLTSPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITEVLRSGHSTEARENAAATLFSLSAVHDYKKRIAEEGGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTENCVRMIDAGAVTALVEALGNEGVAEEAAGALALVVRQPIGAEAVGKDERAVAGLMAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQMLLFTGTKRARRKAASLARVFQRCEQVTMHYAYASNSTPNRDSSFPSEVSVPISISVPVV 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2697402 2699528 + CmoCh18G004110.1 Cmo18g00411 402184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00411 708 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 688 - -
Cmo18g00411 708 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Cmo18g00411 708 SUPERFAMILY ARM repeat 394 670 IPR016024 -
Cmo18g00411 708 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Cmo18g00411 708 Gene3D - 515 693 IPR011989 -
Cmo18g00411 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Cmo18g00411 708 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Cmo18g00411 708 CDD RING-Ubox_PUB 292 334 IPR045210 -
Cmo18g00411 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Cmo18g00411 708 Gene3D - 375 514 IPR011989 -
Cmo18g00411 708 SUPERFAMILY RING/U-box 277 362 - -
Cmo18g00411 708 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Cmo18g00411 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Cmo18g00411 708 PANTHER U BOX DOMAIN-CONTAINING 11 688 - -
Cmo18g00411 708 SMART arm_5 547 585 IPR000225 GO:0005515
Cmo18g00411 708 SMART arm_5 506 546 IPR000225 GO:0005515
Cmo18g00411 708 SMART arm_5 421 461 IPR000225 GO:0005515
Cmo18g00411 708 SMART arm_5 463 504 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00612 Cmo18g00411 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00311 Cmo-Chr3:4303256 Cmo18g00411 Cmo-Chr18:2697402 4.31E-133 dispersed
Cmo04g03018 Cmo-Chr4:21194295 Cmo18g00411 Cmo-Chr18:2697402 2.14E-121 dispersed
Cmo07g01269 Cmo-Chr7:6957282 Cmo18g00411 Cmo-Chr18:2697402 1.02E-131 dispersed
Cmo15g00157 Cmo-Chr15:726309 Cmo18g00411 Cmo-Chr18:2697402 8.58E-126 dispersed
Cmo18g00411 Cmo-Chr18:2697402 Cmo01g00619 Cmo-Chr1:3195460 5.72E-98 dispersed
Cmo19g00193 Cmo-Chr19:1241081 Cmo18g00411 Cmo-Chr18:2697402 3.34E-09 dispersed
Cmo04g01808 Cmo-Chr4:9107841 Cmo18g00411 Cmo-Chr18:2697402 3.03E-66 transposed
Cmo13g00612 Cmo-Chr13:6686534 Cmo18g00411 Cmo-Chr18:2697402 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00411 - - csv:101204151 1179.08