Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00412 ATGACATCAGGGAACAGAATGCCGACTTGGAAGGAGAGGGAGAATAACAAGCGGCGTGAGAGGCGCCGCCGTGCCATCGCCGCTAAGATCTTTCTCGGTTTGCGAATGTATGGCAACTACAAGCTTCCCAAGCACTGCGACAATAATGAGGTCCTCAAAGCCCTCTGCAATGAAGCTGGATGGACTGTTGAGGAAGACGGCACTACCTATCGGAAGGGATGCAAGCCTGTGGAACGTGATATCATGGGTGGATCAGCTTCTGCAAGTCCATGTTCATCGTACCAGCCGAGCCCATATACGTCTTATAACCCAAGTCCTGCATCATCTTCCTTCCCAAGCCCCACCTCTTCCCGTTACGCCATTATAGGCAATGGCAATACTGCCGATCCCAATTCCCTCATCCCATGGCTGAAGAACCTCTCCTCAGGTTCATCATCAGCTTCTTCCCGGCTGCCTCATTATAATCATTACATAACTGGCGGCTCTATAAGTGCACCTGTCAGCCCTCCGTCGAGCTCCCCAACCGCTCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCTGCAGCTGCTCCAGCTTGGGCAGCACAGCACTTCTCATGCATGGCGACCCCGCCAAGCCCTGGGCGTCAGGCATGGCATGATAGTATGCGGATTCCTCAAAGTGGACCATCTTCTCCAACCTTCAGCCTTGTGGCAAGGAATCCATTTGGATTCAAGGAGGCAATGTCTGCTGGAGGATCTCGTAACTGGACTCCTGCACAGAGTGGGACATGCTCGCCCACGGTCACTGCAGGCGCCGATCATACTTCAGATGTTCTAATGACAGATGAAAGTGTGGCGGAGTTTGCCTTCGGAAGTTGTTCTGTTGGGTTAGTGAAGCCTTGGGAAGGAGAGAGAATTCATGAGGAATGCATCTCTGATGATCTTGAACTTACACTTGGGAATTCAAGAACAAGGGTTAATCCAGTTACATCCTCTTAA 987 51.27 MTSGNRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPVERDIMGGSASASPCSSYQPSPYTSYNPSPASSSFPSPTSSRYAIIGNGNTADPNSLIPWLKNLSSGSSSASSRLPHYNHYITGGSISAPVSPPSSSPTARTPRKPNDWDNHPAAAPAWAAQHFSCMATPPSPGRQAWHDSMRIPQSGPSSPTFSLVARNPFGFKEAMSAGGSRNWTPAQSGTCSPTVTAGADHTSDVLMTDESVAEFAFGSCSVGLVKPWEGERIHEECISDDLELTLGNSRTRVNPVTSS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2705280 2707890 + CmoCh18G004120.1 Cmo18g00412 402185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00412 328 MobiDBLite consensus disorder prediction 162 190 - -
Cmo18g00412 328 MobiDBLite consensus disorder prediction 249 264 - -
Cmo18g00412 328 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 321 - -
Cmo18g00412 328 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 141 IPR008540 -
Cmo18g00412 328 MobiDBLite consensus disorder prediction 1 20 - -
Cmo18g00412 328 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 321 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cmo18g00412 328 MobiDBLite consensus disorder prediction 85 115 - -
Cmo18g00412 328 MobiDBLite consensus disorder prediction 86 115 - -
Cmo18g00412 328 MobiDBLite consensus disorder prediction 245 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00412 - - - csv:101204637 451.055
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00609 Cmo18g00412 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00463 Cmo-Chr16:2222424 Cmo18g00412 Cmo-Chr18:2705280 5.55E-112 dispersed
Cmo18g00412 Cmo-Chr18:2705280 Cmo18g00484 Cmo-Chr18:3331106 1.70E-17 dispersed
Cmo13g00609 Cmo-Chr13:6674594 Cmo18g00412 Cmo-Chr18:2705280 9.11E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g261 Blo01g00870 Blo11g00263 . . . . Bma14g00977 . Cmo13g00609 Cmo18g00412 . . . . . Cpe09g00790 . . . . . . . . . . . . . . . . . Cone6ag0940 Cone9ag0944 . . Chy12g00053 . . . . Bda07g00961 . . . . Sed08g2730 . . Cma13g00580 Cma18g00433 Car13g00463 Car18g00409 . Cpe20g00481 Bhi08g02145 Tan05g2533 Cmetu12g0459 Lac10g0987 Hepe07g1834 . . Cla03g00693 Cam03g0700 Cec03g0673 Cco03g0709 Clacu03g0742 Cmu03g1334 Cre03g0981 Lsi02g00836 Csa01g02293 . Cme12g01261
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g00435 CST 86 391 BZR Transcription Factor Family AT1G75080 59.2 4.7e-81 298.9
Cmo07g00506 CST 33 323 BZR Transcription Factor Family AT1G75080 58.6 7.4e-79 291.6
Cmo03g00806 CST 28 318 BZR Transcription Factor Family AT1G75080 58.4 1.7e-78 290.4
Cmo05g00234 CST 33 298 BZR Transcription Factor Family AT1G75080 60.9 2.8e-78 289.7
Cmo12g00435 CST 86 391 BZR Transcription Factor Family AT1G19350 57.6 1.1e-79 294.3
Cmo07g00506 CST 33 321 BZR Transcription Factor Family AT1G19350 59.6 2.8e-78 289.7
Cmo05g00234 CST 33 299 BZR Transcription Factor Family AT1G19350 60.7 2.8e-78 289.7
Cmo03g00806 CST 28 317 BZR Transcription Factor Family AT1G19350 59.2 4.8e-78 288.9
Cmo07g00506 CST 10 323 BZR Transcription Factor Family AT3G50750 56.6 1.7e-76 283.5
Cmo03g00806 CST 6 313 BZR Transcription Factor Family AT3G50750 57.7 1.7e-76 283.5
Cmo05g00234 CST 1 293 BZR Transcription Factor Family AT3G50750 50.2 5.0e-57 218.8
Cmo04g00712 CST 77 326 BZR Transcription Factor Family AT4G18890 54.2 1.7e-49 193.4
Cmo16g00463 . 77 325 BZR Transcription Factor Family AT4G18890 52.6 5.5e-48 188.3
Cmo18g00412 CST 80 321 BZR Transcription Factor Family AT4G18890 52.6 6.1e-47 184.9
Cmo04g00712 CST 1 326 BZR Transcription Factor Family AT1G78700 72.2 1.3e-117 420.2
Cmo16g00463 . 1 325 BZR Transcription Factor Family AT1G78700 71.9 3.7e-115 412.1
Cmo13g00609 CST 1 342 BZR Transcription Factor Family AT1G78700 65.5 5.5e-103 371.7
Cmo18g00412 CST 1 321 BZR Transcription Factor Family AT1G78700 68.3 9.7e-100 360.9
Cmo03g00806 CST 28 200 BZR Transcription Factor Family AT4G36780 78.5 1.2e-63 240.7
Cmo07g00506 CST 33 204 BZR Transcription Factor Family AT4G36780 76.3 7.2e-61 231.5
Cmo05g00234 CST 33 197 BZR Transcription Factor Family AT4G36780 57.6 3.0e-38 156.4
Cmo12g00435 CST 118 289 BZR Transcription Factor Family AT4G36780 56.7 1.9e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11498 PF05687 BES1_N 2.10E-66 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00412 Cmo_Chr18 FPKM 18.739927 18.4624 15.624686 14.476073 31.914789 32.271706 31.900846 4.698023 4.647564 4.333271