Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00412 ATGACATCAGGGAACAGAATGCCGACTTGGAAGGAGAGGGAGAATAACAAGCGGCGTGAGAGGCGCCGCCGTGCCATCGCCGCTAAGATCTTTCTCGGTTTGCGAATGTATGGCAACTACAAGCTTCCCAAGCACTGCGACAATAATGAGGTCCTCAAAGCCCTCTGCAATGAAGCTGGATGGACTGTTGAGGAAGACGGCACTACCTATCGGAAGGGATGCAAGCCTGTGGAACGTGATATCATGGGTGGATCAGCTTCTGCAAGTCCATGTTCATCGTACCAGCCGAGCCCATATACGTCTTATAACCCAAGTCCTGCATCATCTTCCTTCCCAAGCCCCACCTCTTCCCGTTACGCCATTATAGGCAATGGCAATACTGCCGATCCCAATTCCCTCATCCCATGGCTGAAGAACCTCTCCTCAGGTTCATCATCAGCTTCTTCCCGGCTGCCTCATTATAATCATTACATAACTGGCGGCTCTATAAGTGCACCTGTCAGCCCTCCGTCGAGCTCCCCAACCGCTCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCTGCAGCTGCTCCAGCTTGGGCAGCACAGCACTTCTCATGCATGGCGACCCCGCCAAGCCCTGGGCGTCAGGCATGGCATGATAGTATGCGGATTCCTCAAAGTGGACCATCTTCTCCAACCTTCAGCCTTGTGGCAAGGAATCCATTTGGATTCAAGGAGGCAATGTCTGCTGGAGGATCTCGTAACTGGACTCCTGCACAGAGTGGGACATGCTCGCCCACGGTCACTGCAGGCGCCGATCATACTTCAGATGTTCTAATGACAGATGAAAGTGTGGCGGAGTTTGCCTTCGGAAGTTGTTCTGTTGGGTTAGTGAAGCCTTGGGAAGGAGAGAGAATTCATGAGGAATGCATCTCTGATGATCTTGAACTTACACTTGGGAATTCAAGAACAAGGGTTAATCCAGTTACATCCTCTTAA 987 51.27 MTSGNRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPVERDIMGGSASASPCSSYQPSPYTSYNPSPASSSFPSPTSSRYAIIGNGNTADPNSLIPWLKNLSSGSSSASSRLPHYNHYITGGSISAPVSPPSSSPTARTPRKPNDWDNHPAAAPAWAAQHFSCMATPPSPGRQAWHDSMRIPQSGPSSPTFSLVARNPFGFKEAMSAGGSRNWTPAQSGTCSPTVTAGADHTSDVLMTDESVAEFAFGSCSVGLVKPWEGERIHEECISDDLELTLGNSRTRVNPVTSS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2705280 2707890 + CmoCh18G004120.1 Cmo18g00412 402185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00412 328 MobiDBLite consensus disorder prediction 162 190 - -
Cmo18g00412 328 MobiDBLite consensus disorder prediction 249 264 - -
Cmo18g00412 328 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 321 - -
Cmo18g00412 328 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 141 IPR008540 -
Cmo18g00412 328 MobiDBLite consensus disorder prediction 1 20 - -
Cmo18g00412 328 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 321 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cmo18g00412 328 MobiDBLite consensus disorder prediction 85 115 - -
Cmo18g00412 328 MobiDBLite consensus disorder prediction 86 115 - -
Cmo18g00412 328 MobiDBLite consensus disorder prediction 245 264 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00609 Cmo18g00412 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00463 Cmo-Chr16:2222424 Cmo18g00412 Cmo-Chr18:2705280 5.55E-112 dispersed
Cmo18g00412 Cmo-Chr18:2705280 Cmo18g00484 Cmo-Chr18:3331106 1.70E-17 dispersed
Cmo13g00609 Cmo-Chr13:6674594 Cmo18g00412 Cmo-Chr18:2705280 9.11E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11498 PF05687 BES1_N 2.10E-66 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00412 - - csv:101204637 451.055